Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00160 and ECD_00161 are separated by 154 nucleotides ECD_00161 and ECD_00162 are separated by 88 nucleotides ECD_00162 and ECD_00163 are separated by 161 nucleotides
ECD_00160: ECD_00160 - serine endoprotease (protease Do), membrane-associated, at 183,727 to 185,151
_00160
ECD_00161: ECD_00161 - carbohydrate diacid regulon transcriptional regulator; autoregulator, at 185,306 to 186,463
_00161
ECD_00162: ECD_00162 - UPF0325 family protein, at 186,552 to 186,938
_00162
ECD_00163: ECD_00163 - phosphodiesterase with model substrate bis-pNPP, at 187,100 to 187,912
_00163
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 184.527 kb on + strand, within ECD_00160 at 184.673 kb on + strand, within ECD_00160 at 184.750 kb on - strand, within ECD_00160 at 184.794 kb on + strand, within ECD_00160 at 184.961 kb on + strand, within ECD_00160 at 184.961 kb on + strand, within ECD_00160 at 185.135 kb on - strand at 185.150 kb on - strand at 185.193 kb on + strand at 185.194 kb on - strand at 185.194 kb on - strand at 185.223 kb on - strand at 185.260 kb on + strand at 185.261 kb on - strand at 185.265 kb on + strand at 185.266 kb on - strand at 185.266 kb on - strand at 185.269 kb on + strand at 185.282 kb on + strand at 185.305 kb on + strand at 185.305 kb on + strand at 185.306 kb on - strand at 185.306 kb on - strand at 185.306 kb on - strand at 185.306 kb on - strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.357 kb on - strand at 185.388 kb on + strand at 185.388 kb on + strand at 185.388 kb on + strand at 185.389 kb on - strand at 185.410 kb on + strand at 185.411 kb on - strand at 185.539 kb on + strand, within ECD_00161 at 185.577 kb on + strand, within ECD_00161 at 185.577 kb on + strand, within ECD_00161 at 185.611 kb on + strand, within ECD_00161 at 185.611 kb on + strand, within ECD_00161 at 185.612 kb on - strand, within ECD_00161 at 185.752 kb on + strand, within ECD_00161 at 186.063 kb on - strand, within ECD_00161 at 186.156 kb on - strand, within ECD_00161 at 186.161 kb on + strand, within ECD_00161 at 186.177 kb on + strand, within ECD_00161 at 186.340 kb on + strand, within ECD_00161 at 186.340 kb on + strand, within ECD_00161 at 186.340 kb on + strand, within ECD_00161 at 186.340 kb on + strand, within ECD_00161 at 186.341 kb on - strand, within ECD_00161 at 186.353 kb on - strand at 186.370 kb on + strand at 186.376 kb on + strand at 186.377 kb on - strand at 186.377 kb on - strand at 186.431 kb on + strand at 186.431 kb on + strand at 186.431 kb on + strand at 186.431 kb on + strand at 186.565 kb on - strand at 186.600 kb on - strand, within ECD_00162 at 186.606 kb on + strand, within ECD_00162 at 186.606 kb on + strand, within ECD_00162 at 186.628 kb on - strand, within ECD_00162 at 186.628 kb on - strand, within ECD_00162 at 186.628 kb on - strand, within ECD_00162 at 186.628 kb on - strand, within ECD_00162 at 186.795 kb on - strand, within ECD_00162 at 186.795 kb on - strand, within ECD_00162 at 186.909 kb on - strand at 186.939 kb on - strand at 186.939 kb on - strand at 186.974 kb on - strand at 187.043 kb on - strand at 187.043 kb on - strand at 187.076 kb on + strand at 187.077 kb on - strand at 187.121 kb on + strand at 187.179 kb on + strand at 187.179 kb on + strand at 187.179 kb on + strand at 187.179 kb on + strand at 187.180 kb on - strand at 187.180 kb on - strand at 187.180 kb on - strand at 187.180 kb on - strand at 187.180 kb on - strand at 187.180 kb on - strand at 187.412 kb on + strand, within ECD_00163 at 187.413 kb on - strand, within ECD_00163
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 184,527 + ECD_00160 0.56 -1.3 184,673 + ECD_00160 0.66 +0.4 184,750 - ECD_00160 0.72 -1.0 184,794 + ECD_00160 0.75 +0.4 184,961 + ECD_00160 0.87 -0.2 184,961 + ECD_00160 0.87 +0.4 185,135 - +1.3 185,150 - -0.9 185,193 + -0.9 185,194 - -0.2 185,194 - -0.3 185,223 - +0.2 185,260 + -1.1 185,261 - -0.5 185,265 + -0.1 185,266 - -0.2 185,266 - +0.2 185,269 + +0.0 185,282 + -1.7 185,305 + -1.1 185,305 + +0.3 185,306 - +0.5 185,306 - -0.1 185,306 - -2.5 185,306 - +1.5 185,356 + -1.5 185,356 + -1.7 185,356 + +1.6 185,356 + +0.2 185,356 + -1.5 185,357 - +0.3 185,388 + +0.4 185,388 + -0.4 185,388 + +0.2 185,389 - -1.5 185,410 + -1.4 185,411 - -0.5 185,539 + ECD_00161 0.20 +0.6 185,577 + ECD_00161 0.23 -2.1 185,577 + ECD_00161 0.23 -0.7 185,611 + ECD_00161 0.26 -0.9 185,611 + ECD_00161 0.26 -0.1 185,612 - ECD_00161 0.26 +0.5 185,752 + ECD_00161 0.39 +0.3 186,063 - ECD_00161 0.65 +0.9 186,156 - ECD_00161 0.73 +0.7 186,161 + ECD_00161 0.74 +1.0 186,177 + ECD_00161 0.75 +0.9 186,340 + ECD_00161 0.89 +0.3 186,340 + ECD_00161 0.89 -0.6 186,340 + ECD_00161 0.89 -0.6 186,340 + ECD_00161 0.89 -1.1 186,341 - ECD_00161 0.89 +1.2 186,353 - +0.7 186,370 + -0.9 186,376 + +1.7 186,377 - -0.1 186,377 - +0.5 186,431 + +0.5 186,431 + +0.4 186,431 + +0.5 186,431 + -0.3 186,565 - +0.1 186,600 - ECD_00162 0.12 -0.2 186,606 + ECD_00162 0.14 +0.5 186,606 + ECD_00162 0.14 +0.5 186,628 - ECD_00162 0.20 +1.6 186,628 - ECD_00162 0.20 +0.1 186,628 - ECD_00162 0.20 -0.1 186,628 - ECD_00162 0.20 -0.8 186,795 - ECD_00162 0.63 +0.8 186,795 - ECD_00162 0.63 -1.3 186,909 - -1.3 186,939 - +0.6 186,939 - -0.9 186,974 - +0.3 187,043 - -0.7 187,043 - -0.4 187,076 + +0.1 187,077 - -0.9 187,121 + -0.6 187,179 + -2.9 187,179 + -0.5 187,179 + -0.7 187,179 + -0.0 187,180 - -0.0 187,180 - -0.4 187,180 - +0.5 187,180 - -0.3 187,180 - +0.2 187,180 - -0.1 187,412 + ECD_00163 0.38 -1.2 187,413 - ECD_00163 0.38 -2.3
Or see this region's nucleotide sequence