Experiment: Laval1257
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00106 and ECD_00107 are separated by 9 nucleotides ECD_00107 and ECD_00108 are separated by 202 nucleotides ECD_00108 and ECD_00109 are separated by 87 nucleotides ECD_00109 and ECD_00110 overlap by 4 nucleotides
ECD_00106: ECD_00106 - T2SE secretion family protein; P-loop ATPase superfamily protein, at 118,519 to 119,904
_00106
ECD_00107: ECD_00107 - putative prepilin peptidase-dependent pilin, at 119,914 to 120,354
_00107
ECD_00108: ECD_00108 - quinolinate phosphoribosyltransferase, at 120,557 to 121,450
_00108
ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089
_00109
ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940
_00110
Position (kb)
120
121
122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 119.638 kb on + strand, within ECD_00106 at 119.639 kb on - strand, within ECD_00106 at 119.639 kb on - strand, within ECD_00106 at 119.651 kb on - strand, within ECD_00106 at 119.761 kb on - strand, within ECD_00106 at 119.794 kb on + strand at 119.795 kb on - strand at 119.898 kb on + strand at 119.899 kb on - strand at 119.915 kb on + strand at 119.915 kb on + strand at 119.916 kb on - strand at 119.979 kb on + strand, within ECD_00107 at 120.163 kb on - strand, within ECD_00107 at 120.163 kb on - strand, within ECD_00107 at 120.166 kb on + strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.167 kb on - strand, within ECD_00107 at 120.196 kb on + strand, within ECD_00107 at 120.226 kb on + strand, within ECD_00107 at 120.227 kb on - strand, within ECD_00107 at 120.227 kb on - strand, within ECD_00107 at 120.258 kb on - strand, within ECD_00107 at 120.258 kb on - strand, within ECD_00107 at 120.327 kb on + strand at 120.555 kb on + strand at 120.556 kb on - strand at 120.599 kb on - strand at 120.619 kb on + strand at 120.804 kb on - strand, within ECD_00108 at 120.880 kb on + strand, within ECD_00108 at 120.881 kb on - strand, within ECD_00108 at 120.884 kb on - strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.038 kb on + strand, within ECD_00108 at 121.216 kb on + strand, within ECD_00108 at 121.217 kb on - strand, within ECD_00108 at 121.346 kb on + strand, within ECD_00108 at 121.434 kb on + strand at 121.453 kb on + strand at 121.496 kb on - strand at 121.509 kb on + strand at 121.513 kb on - strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.523 kb on - strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.524 kb on + strand at 121.525 kb on - strand at 121.642 kb on + strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.643 kb on - strand, within ECD_00109 at 121.645 kb on + strand, within ECD_00109 at 121.689 kb on + strand, within ECD_00109 at 121.703 kb on - strand, within ECD_00109 at 121.796 kb on + strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.797 kb on - strand, within ECD_00109 at 121.841 kb on + strand, within ECD_00109 at 121.967 kb on + strand, within ECD_00109 at 122.005 kb on + strand, within ECD_00109 at 122.006 kb on - strand, within ECD_00109 at 122.093 kb on + strand at 122.098 kb on - strand at 122.098 kb on - strand at 122.229 kb on + strand, within ECD_00110 at 122.230 kb on - strand, within ECD_00110 at 122.259 kb on - strand, within ECD_00110 at 122.276 kb on + strand, within ECD_00110 at 122.340 kb on + strand, within ECD_00110 at 122.341 kb on - strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.365 kb on + strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.366 kb on - strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110 at 122.385 kb on + strand, within ECD_00110
Per-strain Table
Position Strand Gene LocusTag Fraction Laval1257 remove 119,638 + ECD_00106 0.81 -0.3 119,639 - ECD_00106 0.81 -1.3 119,639 - ECD_00106 0.81 -0.9 119,651 - ECD_00106 0.82 -0.4 119,761 - ECD_00106 0.90 +0.7 119,794 + +0.5 119,795 - -1.5 119,898 + -0.7 119,899 - -0.4 119,915 + -2.0 119,915 + +0.5 119,916 - -0.5 119,979 + ECD_00107 0.15 -2.4 120,163 - ECD_00107 0.56 -1.1 120,163 - ECD_00107 0.56 +0.5 120,166 + ECD_00107 0.57 -0.5 120,167 - ECD_00107 0.57 +0.1 120,167 - ECD_00107 0.57 -1.2 120,167 - ECD_00107 0.57 -0.6 120,167 - ECD_00107 0.57 -0.7 120,196 + ECD_00107 0.64 -1.7 120,226 + ECD_00107 0.71 +0.3 120,227 - ECD_00107 0.71 -1.8 120,227 - ECD_00107 0.71 +0.5 120,258 - ECD_00107 0.78 +0.4 120,258 - ECD_00107 0.78 +0.3 120,327 + -2.0 120,555 + +0.4 120,556 - +0.4 120,599 - +0.3 120,619 + -2.3 120,804 - ECD_00108 0.28 -0.5 120,880 + ECD_00108 0.36 -0.0 120,881 - ECD_00108 0.36 -1.3 120,884 - ECD_00108 0.37 -0.2 121,038 + ECD_00108 0.54 +2.1 121,038 + ECD_00108 0.54 -0.7 121,216 + ECD_00108 0.74 -1.4 121,217 - ECD_00108 0.74 +0.0 121,346 + ECD_00108 0.88 -0.6 121,434 + +0.1 121,453 + -0.5 121,496 - +0.2 121,509 + -0.2 121,513 - -0.2 121,522 + +0.0 121,522 + -0.4 121,522 + -0.2 121,522 + +0.1 121,522 + +0.9 121,523 - -2.0 121,524 + +0.5 121,524 + +0.2 121,524 + +0.6 121,524 + +0.2 121,524 + +0.0 121,524 + -0.3 121,524 + -0.7 121,525 - -0.7 121,642 + ECD_00109 0.19 +0.7 121,643 - ECD_00109 0.19 +0.5 121,643 - ECD_00109 0.19 +1.3 121,643 - ECD_00109 0.19 -0.3 121,645 + ECD_00109 0.19 +0.4 121,689 + ECD_00109 0.27 -1.3 121,703 - ECD_00109 0.30 +0.0 121,796 + ECD_00109 0.47 +0.9 121,797 - ECD_00109 0.47 -0.4 121,797 - ECD_00109 0.47 -1.7 121,797 - ECD_00109 0.47 -0.3 121,841 + ECD_00109 0.55 +0.3 121,967 + ECD_00109 0.78 -2.9 122,005 + ECD_00109 0.85 -0.9 122,006 - ECD_00109 0.85 -1.2 122,093 + -1.3 122,098 - -0.2 122,098 - -1.4 122,229 + ECD_00110 0.17 -1.5 122,230 - ECD_00110 0.17 -1.5 122,259 - ECD_00110 0.20 -0.1 122,276 + ECD_00110 0.22 -0.2 122,340 + ECD_00110 0.30 -0.8 122,341 - ECD_00110 0.30 -1.6 122,365 + ECD_00110 0.33 -1.5 122,365 + ECD_00110 0.33 -2.2 122,365 + ECD_00110 0.33 -1.1 122,366 - ECD_00110 0.33 -0.8 122,366 - ECD_00110 0.33 +1.2 122,366 - ECD_00110 0.33 -0.1 122,366 - ECD_00110 0.33 -0.5 122,385 + ECD_00110 0.35 -0.5 122,385 + ECD_00110 0.35 +0.0
Or see this region's nucleotide sequence