Strain Fitness in Escherichia coli BL21 around ECD_00108

Experiment: Laval1257

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00106 and ECD_00107 are separated by 9 nucleotidesECD_00107 and ECD_00108 are separated by 202 nucleotidesECD_00108 and ECD_00109 are separated by 87 nucleotidesECD_00109 and ECD_00110 overlap by 4 nucleotides ECD_00106: ECD_00106 - T2SE secretion family protein; P-loop ATPase superfamily protein, at 118,519 to 119,904 _00106 ECD_00107: ECD_00107 - putative prepilin peptidase-dependent pilin, at 119,914 to 120,354 _00107 ECD_00108: ECD_00108 - quinolinate phosphoribosyltransferase, at 120,557 to 121,450 _00108 ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089 _00109 ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940 _00110 Position (kb) 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 119.638 kb on + strand, within ECD_00106at 119.639 kb on - strand, within ECD_00106at 119.639 kb on - strand, within ECD_00106at 119.651 kb on - strand, within ECD_00106at 119.761 kb on - strand, within ECD_00106at 119.794 kb on + strandat 119.795 kb on - strandat 119.898 kb on + strandat 119.899 kb on - strandat 119.915 kb on + strandat 119.915 kb on + strandat 119.916 kb on - strandat 119.979 kb on + strand, within ECD_00107at 120.163 kb on - strand, within ECD_00107at 120.163 kb on - strand, within ECD_00107at 120.166 kb on + strand, within ECD_00107at 120.167 kb on - strand, within ECD_00107at 120.167 kb on - strand, within ECD_00107at 120.167 kb on - strand, within ECD_00107at 120.167 kb on - strand, within ECD_00107at 120.196 kb on + strand, within ECD_00107at 120.226 kb on + strand, within ECD_00107at 120.227 kb on - strand, within ECD_00107at 120.227 kb on - strand, within ECD_00107at 120.258 kb on - strand, within ECD_00107at 120.258 kb on - strand, within ECD_00107at 120.327 kb on + strandat 120.555 kb on + strandat 120.556 kb on - strandat 120.599 kb on - strandat 120.619 kb on + strandat 120.804 kb on - strand, within ECD_00108at 120.880 kb on + strand, within ECD_00108at 120.881 kb on - strand, within ECD_00108at 120.884 kb on - strand, within ECD_00108at 121.038 kb on + strand, within ECD_00108at 121.038 kb on + strand, within ECD_00108at 121.216 kb on + strand, within ECD_00108at 121.217 kb on - strand, within ECD_00108at 121.346 kb on + strand, within ECD_00108at 121.434 kb on + strandat 121.453 kb on + strandat 121.496 kb on - strandat 121.509 kb on + strandat 121.513 kb on - strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.522 kb on + strandat 121.523 kb on - strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.524 kb on + strandat 121.525 kb on - strandat 121.642 kb on + strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.643 kb on - strand, within ECD_00109at 121.645 kb on + strand, within ECD_00109at 121.689 kb on + strand, within ECD_00109at 121.703 kb on - strand, within ECD_00109at 121.796 kb on + strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.797 kb on - strand, within ECD_00109at 121.841 kb on + strand, within ECD_00109at 121.967 kb on + strand, within ECD_00109at 122.005 kb on + strand, within ECD_00109at 122.006 kb on - strand, within ECD_00109at 122.093 kb on + strandat 122.098 kb on - strandat 122.098 kb on - strandat 122.229 kb on + strand, within ECD_00110at 122.230 kb on - strand, within ECD_00110at 122.259 kb on - strand, within ECD_00110at 122.276 kb on + strand, within ECD_00110at 122.340 kb on + strand, within ECD_00110at 122.341 kb on - strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110

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Per-strain Table

Position Strand Gene LocusTag Fraction Laval1257
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119,638 + ECD_00106 0.81 -0.3
119,639 - ECD_00106 0.81 -1.3
119,639 - ECD_00106 0.81 -0.9
119,651 - ECD_00106 0.82 -0.4
119,761 - ECD_00106 0.90 +0.7
119,794 + +0.5
119,795 - -1.5
119,898 + -0.7
119,899 - -0.4
119,915 + -2.0
119,915 + +0.5
119,916 - -0.5
119,979 + ECD_00107 0.15 -2.4
120,163 - ECD_00107 0.56 -1.1
120,163 - ECD_00107 0.56 +0.5
120,166 + ECD_00107 0.57 -0.5
120,167 - ECD_00107 0.57 +0.1
120,167 - ECD_00107 0.57 -1.2
120,167 - ECD_00107 0.57 -0.6
120,167 - ECD_00107 0.57 -0.7
120,196 + ECD_00107 0.64 -1.7
120,226 + ECD_00107 0.71 +0.3
120,227 - ECD_00107 0.71 -1.8
120,227 - ECD_00107 0.71 +0.5
120,258 - ECD_00107 0.78 +0.4
120,258 - ECD_00107 0.78 +0.3
120,327 + -2.0
120,555 + +0.4
120,556 - +0.4
120,599 - +0.3
120,619 + -2.3
120,804 - ECD_00108 0.28 -0.5
120,880 + ECD_00108 0.36 -0.0
120,881 - ECD_00108 0.36 -1.3
120,884 - ECD_00108 0.37 -0.2
121,038 + ECD_00108 0.54 +2.1
121,038 + ECD_00108 0.54 -0.7
121,216 + ECD_00108 0.74 -1.4
121,217 - ECD_00108 0.74 +0.0
121,346 + ECD_00108 0.88 -0.6
121,434 + +0.1
121,453 + -0.5
121,496 - +0.2
121,509 + -0.2
121,513 - -0.2
121,522 + +0.0
121,522 + -0.4
121,522 + -0.2
121,522 + +0.1
121,522 + +0.9
121,523 - -2.0
121,524 + +0.5
121,524 + +0.2
121,524 + +0.6
121,524 + +0.2
121,524 + +0.0
121,524 + -0.3
121,524 + -0.7
121,525 - -0.7
121,642 + ECD_00109 0.19 +0.7
121,643 - ECD_00109 0.19 +0.5
121,643 - ECD_00109 0.19 +1.3
121,643 - ECD_00109 0.19 -0.3
121,645 + ECD_00109 0.19 +0.4
121,689 + ECD_00109 0.27 -1.3
121,703 - ECD_00109 0.30 +0.0
121,796 + ECD_00109 0.47 +0.9
121,797 - ECD_00109 0.47 -0.4
121,797 - ECD_00109 0.47 -1.7
121,797 - ECD_00109 0.47 -0.3
121,841 + ECD_00109 0.55 +0.3
121,967 + ECD_00109 0.78 -2.9
122,005 + ECD_00109 0.85 -0.9
122,006 - ECD_00109 0.85 -1.2
122,093 + -1.3
122,098 - -0.2
122,098 - -1.4
122,229 + ECD_00110 0.17 -1.5
122,230 - ECD_00110 0.17 -1.5
122,259 - ECD_00110 0.20 -0.1
122,276 + ECD_00110 0.22 -0.2
122,340 + ECD_00110 0.30 -0.8
122,341 - ECD_00110 0.30 -1.6
122,365 + ECD_00110 0.33 -1.5
122,365 + ECD_00110 0.33 -2.2
122,365 + ECD_00110 0.33 -1.1
122,366 - ECD_00110 0.33 -0.8
122,366 - ECD_00110 0.33 +1.2
122,366 - ECD_00110 0.33 -0.1
122,366 - ECD_00110 0.33 -0.5
122,385 + ECD_00110 0.35 -0.5
122,385 + ECD_00110 0.35 +0.0

Or see this region's nucleotide sequence