Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26145 and LU632_RS26150 are separated by 335 nucleotides LU632_RS26150 and LU632_RS26155 are separated by 212 nucleotides LU632_RS26155 and LU632_RS26160 overlap by 4 nucleotides LU632_RS26160 and LU632_RS26165 overlap by 4 nucleotides
LU632_RS26145: LU632_RS26145 - hypothetical protein, at 29,615 to 29,866
_RS26145
LU632_RS26150: LU632_RS26150 - replication/maintenance protein RepL, at 30,202 to 30,627
_RS26150
LU632_RS26155: LU632_RS26155 - hypothetical protein, at 30,840 to 31,172
_RS26155
LU632_RS26160: LU632_RS26160 - ANR family transcriptional regulator, at 31,169 to 31,387
_RS26160
LU632_RS26165: LU632_RS26165 - PD-(D/E)XK nuclease-like domain-containing protein, at 31,384 to 33,480
_RS26165
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.870 kb on - strand at 29.870 kb on - strand at 29.870 kb on - strand at 29.899 kb on - strand at 29.924 kb on + strand at 29.925 kb on - strand at 29.974 kb on - strand at 29.993 kb on + strand at 30.002 kb on - strand at 30.631 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.691 kb on - strand at 30.696 kb on + strand at 30.696 kb on + strand at 30.696 kb on + strand at 30.697 kb on - strand at 30.697 kb on - strand at 30.702 kb on + strand at 30.702 kb on + strand at 30.702 kb on + strand at 30.703 kb on - strand at 30.703 kb on - strand at 30.703 kb on - strand at 30.714 kb on + strand at 30.715 kb on - strand at 30.721 kb on - strand at 30.721 kb on - strand at 30.734 kb on + strand at 30.735 kb on - strand at 30.776 kb on + strand at 30.777 kb on - strand at 30.777 kb on - strand at 30.777 kb on - strand at 30.778 kb on + strand at 30.778 kb on + strand at 30.779 kb on - strand at 30.779 kb on - strand at 30.779 kb on - strand at 30.779 kb on - strand at 30.779 kb on - strand at 30.867 kb on + strand at 30.891 kb on - strand, within LU632_RS26155 at 30.943 kb on + strand, within LU632_RS26155 at 30.943 kb on + strand, within LU632_RS26155 at 30.944 kb on - strand, within LU632_RS26155 at 30.944 kb on - strand, within LU632_RS26155 at 30.944 kb on - strand, within LU632_RS26155 at 30.955 kb on + strand, within LU632_RS26155 at 30.955 kb on + strand, within LU632_RS26155 at 30.955 kb on + strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.956 kb on - strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.960 kb on + strand, within LU632_RS26155 at 30.961 kb on - strand, within LU632_RS26155 at 30.961 kb on - strand, within LU632_RS26155 at 31.001 kb on + strand, within LU632_RS26155 at 31.002 kb on - strand, within LU632_RS26155 at 31.002 kb on - strand, within LU632_RS26155 at 31.060 kb on + strand, within LU632_RS26155 at 31.132 kb on + strand, within LU632_RS26155 at 31.132 kb on + strand, within LU632_RS26155 at 31.132 kb on + strand, within LU632_RS26155 at 31.132 kb on + strand, within LU632_RS26155 at 31.132 kb on + strand, within LU632_RS26155 at 31.133 kb on - strand, within LU632_RS26155 at 31.133 kb on - strand, within LU632_RS26155 at 31.149 kb on + strand at 31.149 kb on + strand at 31.149 kb on + strand at 31.149 kb on + strand at 31.149 kb on + strand at 31.149 kb on + strand at 31.149 kb on + strand at 31.150 kb on - strand at 31.150 kb on - strand at 31.197 kb on + strand, within LU632_RS26160 at 31.197 kb on + strand, within LU632_RS26160 at 31.198 kb on - strand, within LU632_RS26160 at 31.204 kb on + strand, within LU632_RS26160 at 31.204 kb on + strand, within LU632_RS26160 at 31.205 kb on - strand, within LU632_RS26160 at 31.205 kb on - strand, within LU632_RS26160 at 31.205 kb on - strand, within LU632_RS26160 at 31.238 kb on - strand, within LU632_RS26160 at 31.282 kb on + strand, within LU632_RS26160 at 31.354 kb on + strand, within LU632_RS26160 at 31.391 kb on - strand at 31.405 kb on + strand at 31.405 kb on + strand at 31.406 kb on - strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.449 kb on + strand at 31.508 kb on + strand at 31.508 kb on + strand at 31.508 kb on + strand at 31.508 kb on + strand at 31.509 kb on - strand at 31.540 kb on + strand at 31.540 kb on + strand at 31.540 kb on + strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.541 kb on - strand at 31.579 kb on + strand at 31.579 kb on + strand at 31.579 kb on + strand at 31.580 kb on - strand at 31.591 kb on - strand at 31.645 kb on + strand, within LU632_RS26165 at 31.645 kb on + strand, within LU632_RS26165 at 31.684 kb on + strand, within LU632_RS26165 at 31.684 kb on + strand, within LU632_RS26165 at 31.684 kb on + strand, within LU632_RS26165 at 31.685 kb on - strand, within LU632_RS26165 at 31.685 kb on - strand, within LU632_RS26165 at 31.685 kb on - strand, within LU632_RS26165 at 31.718 kb on + strand, within LU632_RS26165 at 31.719 kb on - strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.750 kb on + strand, within LU632_RS26165 at 31.751 kb on - strand, within LU632_RS26165 at 31.751 kb on - strand, within LU632_RS26165 at 31.751 kb on - strand, within LU632_RS26165 at 31.751 kb on - strand, within LU632_RS26165 at 31.759 kb on + strand, within LU632_RS26165 at 31.800 kb on + strand, within LU632_RS26165 at 31.801 kb on - strand, within LU632_RS26165 at 31.801 kb on - strand, within LU632_RS26165 at 31.801 kb on - strand, within LU632_RS26165 at 31.845 kb on - strand, within LU632_RS26165 at 31.850 kb on + strand, within LU632_RS26165 at 31.850 kb on + strand, within LU632_RS26165 at 31.850 kb on + strand, within LU632_RS26165 at 31.850 kb on + strand, within LU632_RS26165 at 31.850 kb on + strand, within LU632_RS26165 at 31.850 kb on - strand, within LU632_RS26165 at 31.851 kb on - strand, within LU632_RS26165 at 31.851 kb on - strand, within LU632_RS26165 at 31.851 kb on - strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.852 kb on + strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.853 kb on - strand, within LU632_RS26165 at 31.914 kb on + strand, within LU632_RS26165 at 31.914 kb on + strand, within LU632_RS26165 at 31.915 kb on - strand, within LU632_RS26165 at 31.931 kb on + strand, within LU632_RS26165 at 31.932 kb on - strand, within LU632_RS26165 at 31.932 kb on - strand, within LU632_RS26165 at 31.951 kb on - strand, within LU632_RS26165 at 31.988 kb on + strand, within LU632_RS26165 at 31.988 kb on + strand, within LU632_RS26165 at 31.988 kb on + strand, within LU632_RS26165 at 31.988 kb on + strand, within LU632_RS26165 at 31.989 kb on - strand, within LU632_RS26165 at 31.989 kb on - strand, within LU632_RS26165 at 31.989 kb on - strand, within LU632_RS26165 at 31.992 kb on + strand, within LU632_RS26165 at 31.992 kb on + strand, within LU632_RS26165 at 32.005 kb on - strand, within LU632_RS26165 at 32.007 kb on + strand, within LU632_RS26165 at 32.007 kb on + strand, within LU632_RS26165 at 32.042 kb on + strand, within LU632_RS26165 at 32.049 kb on + strand, within LU632_RS26165 at 32.153 kb on + strand, within LU632_RS26165 at 32.153 kb on + strand, within LU632_RS26165
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 29,870 - +0.0 29,870 - +0.4 29,870 - +0.5 29,899 - -0.1 29,924 + -1.5 29,925 - +0.2 29,974 - +0.3 29,993 + -0.1 30,002 - +0.3 30,631 + -0.3 30,690 + +0.1 30,690 + +0.0 30,691 - +0.5 30,696 + +0.5 30,696 + -0.3 30,696 + -0.3 30,697 - -0.3 30,697 - +0.2 30,702 + +0.7 30,702 + -0.4 30,702 + -0.5 30,703 - +0.1 30,703 - +0.1 30,703 - -0.6 30,714 + -1.1 30,715 - +0.3 30,721 - -0.4 30,721 - +0.4 30,734 + -0.2 30,735 - -0.5 30,776 + +0.2 30,777 - +0.3 30,777 - +1.5 30,777 - -1.1 30,778 + -0.8 30,778 + -1.4 30,779 - +0.1 30,779 - -0.7 30,779 - -0.1 30,779 - +0.3 30,779 - -0.4 30,867 + -0.1 30,891 - LU632_RS26155 0.15 -0.3 30,943 + LU632_RS26155 0.31 +0.8 30,943 + LU632_RS26155 0.31 +0.2 30,944 - LU632_RS26155 0.31 +0.8 30,944 - LU632_RS26155 0.31 -0.2 30,944 - LU632_RS26155 0.31 +0.1 30,955 + LU632_RS26155 0.35 +0.9 30,955 + LU632_RS26155 0.35 -0.1 30,955 + LU632_RS26155 0.35 -0.3 30,956 - LU632_RS26155 0.35 +0.2 30,956 - LU632_RS26155 0.35 +0.6 30,956 - LU632_RS26155 0.35 +0.3 30,956 - LU632_RS26155 0.35 +0.4 30,956 - LU632_RS26155 0.35 -0.2 30,956 - LU632_RS26155 0.35 +0.4 30,956 - LU632_RS26155 0.35 -0.7 30,956 - LU632_RS26155 0.35 +0.3 30,960 + LU632_RS26155 0.36 +0.6 30,960 + LU632_RS26155 0.36 +1.1 30,960 + LU632_RS26155 0.36 +0.4 30,960 + LU632_RS26155 0.36 +0.4 30,960 + LU632_RS26155 0.36 +0.0 30,960 + LU632_RS26155 0.36 +0.3 30,961 - LU632_RS26155 0.36 -0.1 30,961 - LU632_RS26155 0.36 +0.5 31,001 + LU632_RS26155 0.48 -0.0 31,002 - LU632_RS26155 0.49 +0.1 31,002 - LU632_RS26155 0.49 -0.2 31,060 + LU632_RS26155 0.66 +1.6 31,132 + LU632_RS26155 0.88 +0.1 31,132 + LU632_RS26155 0.88 +0.2 31,132 + LU632_RS26155 0.88 +0.9 31,132 + LU632_RS26155 0.88 +0.4 31,132 + LU632_RS26155 0.88 +0.5 31,133 - LU632_RS26155 0.88 +1.2 31,133 - LU632_RS26155 0.88 -0.2 31,149 + +1.1 31,149 + +0.2 31,149 + +0.5 31,149 + +0.6 31,149 + +0.5 31,149 + -0.6 31,149 + +0.4 31,150 - -1.1 31,150 - +2.3 31,197 + LU632_RS26160 0.13 +0.9 31,197 + LU632_RS26160 0.13 +0.3 31,198 - LU632_RS26160 0.13 -0.2 31,204 + LU632_RS26160 0.16 -0.1 31,204 + LU632_RS26160 0.16 +1.0 31,205 - LU632_RS26160 0.16 +0.4 31,205 - LU632_RS26160 0.16 +0.9 31,205 - LU632_RS26160 0.16 +0.3 31,238 - LU632_RS26160 0.32 -0.2 31,282 + LU632_RS26160 0.52 +0.3 31,354 + LU632_RS26160 0.84 +1.4 31,391 - -0.4 31,405 + -0.8 31,405 + +1.4 31,406 - -0.2 31,449 + -0.6 31,449 + -0.5 31,449 + -0.2 31,449 + +1.3 31,449 + +0.1 31,449 + +0.3 31,449 + +0.7 31,508 + -0.1 31,508 + -0.0 31,508 + -0.0 31,508 + -1.0 31,509 - +1.0 31,540 + -0.1 31,540 + +0.1 31,540 + -0.1 31,541 - -0.5 31,541 - +0.7 31,541 - +0.0 31,541 - +0.4 31,541 - +0.0 31,541 - -0.2 31,541 - -0.6 31,579 + +0.5 31,579 + -0.1 31,579 + +0.2 31,580 - +0.2 31,591 - -2.4 31,645 + LU632_RS26165 0.12 -0.1 31,645 + LU632_RS26165 0.12 +0.0 31,684 + LU632_RS26165 0.14 +0.7 31,684 + LU632_RS26165 0.14 -0.5 31,684 + LU632_RS26165 0.14 -0.3 31,685 - LU632_RS26165 0.14 -1.2 31,685 - LU632_RS26165 0.14 +0.3 31,685 - LU632_RS26165 0.14 +0.8 31,718 + LU632_RS26165 0.16 -0.1 31,719 - LU632_RS26165 0.16 +0.2 31,750 + LU632_RS26165 0.17 +1.1 31,750 + LU632_RS26165 0.17 -0.7 31,750 + LU632_RS26165 0.17 +0.2 31,750 + LU632_RS26165 0.17 +0.3 31,750 + LU632_RS26165 0.17 +0.0 31,750 + LU632_RS26165 0.17 -0.2 31,751 - LU632_RS26165 0.18 +0.2 31,751 - LU632_RS26165 0.18 +1.3 31,751 - LU632_RS26165 0.18 -0.0 31,751 - LU632_RS26165 0.18 +0.1 31,759 + LU632_RS26165 0.18 -0.8 31,800 + LU632_RS26165 0.20 +0.8 31,801 - LU632_RS26165 0.20 +0.1 31,801 - LU632_RS26165 0.20 -0.0 31,801 - LU632_RS26165 0.20 +0.3 31,845 - LU632_RS26165 0.22 -0.3 31,850 + LU632_RS26165 0.22 -0.2 31,850 + LU632_RS26165 0.22 +1.6 31,850 + LU632_RS26165 0.22 +0.9 31,850 + LU632_RS26165 0.22 +0.1 31,850 + LU632_RS26165 0.22 +0.2 31,850 - LU632_RS26165 0.22 -0.9 31,851 - LU632_RS26165 0.22 +0.9 31,851 - LU632_RS26165 0.22 +0.6 31,851 - LU632_RS26165 0.22 +0.2 31,852 + LU632_RS26165 0.22 -0.6 31,852 + LU632_RS26165 0.22 +0.7 31,852 + LU632_RS26165 0.22 -0.5 31,852 + LU632_RS26165 0.22 -0.1 31,852 + LU632_RS26165 0.22 +0.3 31,852 + LU632_RS26165 0.22 +1.1 31,852 + LU632_RS26165 0.22 +0.1 31,852 + LU632_RS26165 0.22 +0.5 31,852 + LU632_RS26165 0.22 +0.1 31,852 + LU632_RS26165 0.22 +0.1 31,852 + LU632_RS26165 0.22 +0.2 31,852 + LU632_RS26165 0.22 +0.1 31,852 + LU632_RS26165 0.22 +0.8 31,852 + LU632_RS26165 0.22 -0.0 31,852 + LU632_RS26165 0.22 +0.1 31,852 + LU632_RS26165 0.22 -0.5 31,853 - LU632_RS26165 0.22 -1.4 31,853 - LU632_RS26165 0.22 -0.4 31,853 - LU632_RS26165 0.22 -0.8 31,853 - LU632_RS26165 0.22 +0.2 31,853 - LU632_RS26165 0.22 -0.5 31,853 - LU632_RS26165 0.22 +0.3 31,853 - LU632_RS26165 0.22 -2.4 31,853 - LU632_RS26165 0.22 +1.0 31,914 + LU632_RS26165 0.25 +0.3 31,914 + LU632_RS26165 0.25 -0.0 31,915 - LU632_RS26165 0.25 +0.1 31,931 + LU632_RS26165 0.26 -0.3 31,932 - LU632_RS26165 0.26 -0.2 31,932 - LU632_RS26165 0.26 -0.1 31,951 - LU632_RS26165 0.27 +0.6 31,988 + LU632_RS26165 0.29 +0.3 31,988 + LU632_RS26165 0.29 -0.6 31,988 + LU632_RS26165 0.29 -0.1 31,988 + LU632_RS26165 0.29 +0.5 31,989 - LU632_RS26165 0.29 -0.3 31,989 - LU632_RS26165 0.29 +0.4 31,989 - LU632_RS26165 0.29 +0.1 31,992 + LU632_RS26165 0.29 -0.1 31,992 + LU632_RS26165 0.29 -0.5 32,005 - LU632_RS26165 0.30 -0.1 32,007 + LU632_RS26165 0.30 +0.9 32,007 + LU632_RS26165 0.30 -1.1 32,042 + LU632_RS26165 0.31 +0.2 32,049 + LU632_RS26165 0.32 +0.2 32,153 + LU632_RS26165 0.37 -0.1 32,153 + LU632_RS26165 0.37 -1.0
Or see this region's nucleotide sequence