Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26005 and LU632_RS26010 are separated by 2 nucleotides LU632_RS26010 and LU632_RS26015 overlap by 1 nucleotides LU632_RS26015 and LU632_RS26020 overlap by 4 nucleotides LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides
LU632_RS26005: LU632_RS26005 - hypothetical protein, at 11,851 to 12,402
_RS26005
LU632_RS26010: LU632_RS26010 - head-tail adaptor, at 12,405 to 12,776
_RS26010
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.377 kb on + strand at 12.377 kb on + strand at 12.434 kb on - strand at 12.434 kb on - strand at 12.461 kb on + strand, within LU632_RS26010 at 12.461 kb on + strand, within LU632_RS26010 at 12.461 kb on + strand, within LU632_RS26010 at 12.462 kb on - strand, within LU632_RS26010 at 12.462 kb on - strand, within LU632_RS26010 at 12.466 kb on + strand, within LU632_RS26010 at 12.466 kb on + strand, within LU632_RS26010 at 12.467 kb on - strand, within LU632_RS26010 at 12.488 kb on + strand, within LU632_RS26010 at 12.488 kb on + strand, within LU632_RS26010 at 12.489 kb on - strand, within LU632_RS26010 at 12.490 kb on + strand, within LU632_RS26010 at 12.516 kb on - strand, within LU632_RS26010 at 12.533 kb on + strand, within LU632_RS26010 at 12.533 kb on + strand, within LU632_RS26010 at 12.534 kb on - strand, within LU632_RS26010 at 12.651 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.665 kb on + strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.666 kb on - strand, within LU632_RS26010 at 12.708 kb on + strand, within LU632_RS26010 at 12.708 kb on + strand, within LU632_RS26010 at 12.712 kb on - strand, within LU632_RS26010 at 12.795 kb on + strand at 12.795 kb on + strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.813 kb on + strand at 13.043 kb on + strand, within LU632_RS26015 at 13.043 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.164 kb on + strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.233 kb on - strand, within LU632_RS26015 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 12,377 + -3.4 12,377 + -0.4 12,434 - -2.0 12,434 - -2.0 12,461 + LU632_RS26010 0.15 +0.0 12,461 + LU632_RS26010 0.15 +0.6 12,461 + LU632_RS26010 0.15 +0.0 12,462 - LU632_RS26010 0.15 +0.3 12,462 - LU632_RS26010 0.15 +1.6 12,466 + LU632_RS26010 0.16 +0.6 12,466 + LU632_RS26010 0.16 +0.1 12,467 - LU632_RS26010 0.17 -1.1 12,488 + LU632_RS26010 0.22 -1.0 12,488 + LU632_RS26010 0.22 -0.4 12,489 - LU632_RS26010 0.23 -0.3 12,490 + LU632_RS26010 0.23 -1.9 12,516 - LU632_RS26010 0.30 -0.2 12,533 + LU632_RS26010 0.34 +0.1 12,533 + LU632_RS26010 0.34 -2.4 12,534 - LU632_RS26010 0.35 +0.1 12,651 + LU632_RS26010 0.66 -0.5 12,665 + LU632_RS26010 0.70 -0.8 12,665 + LU632_RS26010 0.70 +1.9 12,665 + LU632_RS26010 0.70 -1.0 12,665 + LU632_RS26010 0.70 +0.6 12,665 + LU632_RS26010 0.70 -2.0 12,666 - LU632_RS26010 0.70 +0.0 12,666 - LU632_RS26010 0.70 +0.6 12,666 - LU632_RS26010 0.70 -0.6 12,666 - LU632_RS26010 0.70 -0.4 12,666 - LU632_RS26010 0.70 -0.6 12,666 - LU632_RS26010 0.70 -0.1 12,666 - LU632_RS26010 0.70 +0.2 12,708 + LU632_RS26010 0.81 +0.2 12,708 + LU632_RS26010 0.81 -0.2 12,712 - LU632_RS26010 0.83 -0.4 12,795 + -3.0 12,795 + +0.1 12,796 - -1.8 12,796 - -0.9 12,796 - -0.7 12,796 - -1.2 12,796 - -1.1 12,796 - -2.1 12,796 - -1.2 12,796 - -2.7 12,796 - -0.4 12,813 + -0.8 13,043 + LU632_RS26015 0.50 -1.1 13,043 + LU632_RS26015 0.50 -0.7 13,162 + LU632_RS26015 0.73 +0.8 13,162 + LU632_RS26015 0.73 -2.7 13,162 + LU632_RS26015 0.73 -2.4 13,162 + LU632_RS26015 0.73 -1.4 13,163 - LU632_RS26015 0.73 -2.9 13,163 - LU632_RS26015 0.73 -1.1 13,164 + LU632_RS26015 0.73 -0.8 13,165 - LU632_RS26015 0.73 -0.9 13,165 - LU632_RS26015 0.73 -2.4 13,165 - LU632_RS26015 0.73 -1.7 13,233 - LU632_RS26015 0.86 -2.1 13,511 + LU632_RS26020 0.54 +1.0 14,296 - -0.4 14,309 + -0.2 14,309 + -0.7 14,310 - -0.9 14,320 + +0.4 14,320 + -1.3 14,320 + +1.4 14,320 + -0.4 14,321 - -1.4 14,371 + -0.6 14,371 + -0.8 14,371 + -0.3 14,372 - -1.0 14,372 - -0.4 14,379 + -0.7 14,380 - -1.9 14,412 - LU632_RS26030 0.11 -1.1 14,456 + LU632_RS26030 0.16 -1.4 14,459 + LU632_RS26030 0.16 +0.3 14,460 - LU632_RS26030 0.16 -0.3 14,460 - LU632_RS26030 0.16 -0.9 14,461 + LU632_RS26030 0.16 -1.0 14,502 - LU632_RS26030 0.21 -2.4 14,510 + LU632_RS26030 0.22 -1.3 14,510 + LU632_RS26030 0.22 -0.5 14,561 + LU632_RS26030 0.27 -0.6 14,672 - LU632_RS26030 0.38 -1.5
Or see this region's nucleotide sequence