Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25330

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25330 and LU632_RS25335 overlap by 59 nucleotides LU632_RS25330: LU632_RS25330 - DUF5710 domain-containing protein, at 214 to 840 _RS25330 LU632_RS25335: LU632_RS25335 - hypothetical protein, at 782 to 3,604 _RS25335 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1 2at 0.045 kb on + strandat 0.072 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.209 kb on + strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.210 kb on - strandat 0.213 kb on + strandat 0.226 kb on - strandat 0.226 kb on - strandat 0.230 kb on - strandat 0.238 kb on - strandat 0.238 kb on - strandat 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.298 kb on + strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.299 kb on - strand, within LU632_RS25330at 0.310 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.560 kb on + strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.561 kb on - strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.562 kb on + strand, within LU632_RS25330at 0.598 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.658 kb on + strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.659 kb on - strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.722 kb on + strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.723 kb on - strand, within LU632_RS25330at 0.809 kb on + strandat 0.810 kb on - strandat 0.857 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.861 kb on - strandat 0.883 kb on - strandat 0.883 kb on - strandat 0.887 kb on - strandat 0.887 kb on - strandat 0.917 kb on + strandat 0.917 kb on + strandat 0.918 kb on - strandat 0.918 kb on - strandat 1.032 kb on - strandat 1.050 kb on + strandat 1.051 kb on - strandat 1.256 kb on + strand, within LU632_RS25335at 1.257 kb on - strand, within LU632_RS25335at 1.334 kb on - strand, within LU632_RS25335at 1.420 kb on + strand, within LU632_RS25335at 1.517 kb on - strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.546 kb on + strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.547 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.549 kb on - strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.668 kb on + strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.669 kb on - strand, within LU632_RS25335at 1.716 kb on + strand, within LU632_RS25335

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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45 + +0.7
72 + -0.0
209 + +1.3
209 + -0.7
209 + +0.2
210 - -0.2
210 - +0.4
210 - +0.4
213 + +1.4
226 - -0.5
226 - -0.3
230 - +0.0
238 - -0.5
238 - +0.6
298 + LU632_RS25330 0.13 -1.3
298 + LU632_RS25330 0.13 +0.2
298 + LU632_RS25330 0.13 +1.3
298 + LU632_RS25330 0.13 +0.6
299 - LU632_RS25330 0.14 +2.0
299 - LU632_RS25330 0.14 -0.3
299 - LU632_RS25330 0.14 +1.0
299 - LU632_RS25330 0.14 +0.1
299 - LU632_RS25330 0.14 -0.2
299 - LU632_RS25330 0.14 +0.1
310 + LU632_RS25330 0.15 +0.1
560 + LU632_RS25330 0.55 -0.2
560 + LU632_RS25330 0.55 +0.7
560 + LU632_RS25330 0.55 +0.3
560 + LU632_RS25330 0.55 +0.7
561 - LU632_RS25330 0.55 -0.4
561 - LU632_RS25330 0.55 -0.4
561 - LU632_RS25330 0.55 -0.0
562 + LU632_RS25330 0.56 +1.4
562 + LU632_RS25330 0.56 -0.6
598 + LU632_RS25330 0.61 +0.2
658 + LU632_RS25330 0.71 -0.4
658 + LU632_RS25330 0.71 +0.2
658 + LU632_RS25330 0.71 -0.2
659 - LU632_RS25330 0.71 -0.1
659 - LU632_RS25330 0.71 +0.6
659 - LU632_RS25330 0.71 -1.9
722 + LU632_RS25330 0.81 +0.4
722 + LU632_RS25330 0.81 +0.0
723 - LU632_RS25330 0.81 -1.6
723 - LU632_RS25330 0.81 -0.5
723 - LU632_RS25330 0.81 -0.1
809 + -0.3
810 - +0.3
857 - +2.6
861 - -0.2
861 - -1.2
861 - -0.8
883 - -0.8
883 - +0.4
887 - +1.4
887 - -0.0
917 + -1.2
917 + +1.3
918 - +0.6
918 - +1.2
1,032 - -1.3
1,050 + -0.0
1,051 - +0.5
1,256 + LU632_RS25335 0.17 +0.4
1,257 - LU632_RS25335 0.17 -0.4
1,334 - LU632_RS25335 0.20 +1.0
1,420 + LU632_RS25335 0.23 +0.2
1,517 - LU632_RS25335 0.26 -0.4
1,546 + LU632_RS25335 0.27 +0.3
1,546 + LU632_RS25335 0.27 -0.2
1,547 - LU632_RS25335 0.27 -0.1
1,547 - LU632_RS25335 0.27 -0.0
1,549 - LU632_RS25335 0.27 -1.3
1,549 - LU632_RS25335 0.27 -0.2
1,549 - LU632_RS25335 0.27 -0.5
1,668 + LU632_RS25335 0.31 +0.4
1,668 + LU632_RS25335 0.31 +0.8
1,668 + LU632_RS25335 0.31 +1.3
1,668 + LU632_RS25335 0.31 +0.8
1,668 + LU632_RS25335 0.31 +0.3
1,669 - LU632_RS25335 0.31 +0.0
1,669 - LU632_RS25335 0.31 -0.1
1,669 - LU632_RS25335 0.31 -0.7
1,669 - LU632_RS25335 0.31 +0.1
1,716 + LU632_RS25335 0.33 -0.3

Or see this region's nucleotide sequence