Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25300

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25295 and mnmE are separated by 463 nucleotidesmnmE and yidC are separated by 81 nucleotides LU632_RS25295: LU632_RS25295 - IS1 family transposase, at 4,809,916 to 4,810,613 _RS25295 LU632_RS25300: mnmE - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 4,811,077 to 4,812,441 mnmE LU632_RS25305: yidC - membrane protein insertase YidC, at 4,812,523 to 4,814,166 yidC Position (kb) 4811 4812 4813Strain fitness (log2 ratio) -1 0 1at 4810.741 kb on - strandat 4810.743 kb on + strandat 4810.743 kb on + strandat 4810.744 kb on - strandat 4810.783 kb on + strandat 4810.817 kb on + strandat 4810.818 kb on - strandat 4810.818 kb on - strandat 4810.832 kb on - strandat 4810.834 kb on - strandat 4810.834 kb on - strandat 4810.862 kb on + strandat 4810.911 kb on + strandat 4810.914 kb on - strandat 4810.914 kb on - strandat 4810.914 kb on - strandat 4810.914 kb on - strandat 4810.944 kb on + strandat 4810.961 kb on + strandat 4811.060 kb on - strandat 4811.065 kb on + strandat 4812.458 kb on - strandat 4812.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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4,810,741 - -0.5
4,810,743 + +0.3
4,810,743 + -0.0
4,810,744 - +0.5
4,810,783 + +0.9
4,810,817 + +0.0
4,810,818 - -0.4
4,810,818 - -1.2
4,810,832 - +0.2
4,810,834 - +0.1
4,810,834 - -0.0
4,810,862 + -0.4
4,810,911 + -0.1
4,810,914 - +0.3
4,810,914 - -0.1
4,810,914 - -0.5
4,810,914 - +0.2
4,810,944 + -0.3
4,810,961 + +0.5
4,811,060 - -0.4
4,811,065 + +0.5
4,812,458 - +0.1
4,812,580 - +0.2

Or see this region's nucleotide sequence