Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ravA and kup are separated by 261 nucleotides kup and LU632_RS24845 are separated by 384 nucleotides LU632_RS24845 and LU632_RS24850 overlap by 4 nucleotides
LU632_RS24835: ravA - ATPase RavA, at 4,732,927 to 4,734,420
ravA
LU632_RS24840: kup - low affinity potassium transporter Kup, at 4,734,682 to 4,736,550
kup
LU632_RS24845: LU632_RS24845 - hypothetical protein, at 4,736,935 to 4,737,171
_RS24845
LU632_RS24850: LU632_RS24850 - transposase, at 4,737,168 to 4,737,737
_RS24850
Position (kb) 4734
4735
4736
4737 Strain fitness (log2 ratio) -2
-1
0
1 at 4733.682 kb on + strand, within ravA at 4733.684 kb on + strand, within ravA at 4733.789 kb on + strand, within ravA at 4733.805 kb on + strand, within ravA at 4734.027 kb on + strand, within ravA at 4734.027 kb on + strand, within ravA at 4734.028 kb on - strand, within ravA at 4734.031 kb on - strand, within ravA at 4734.054 kb on + strand, within ravA at 4734.074 kb on - strand, within ravA at 4734.209 kb on + strand, within ravA at 4734.210 kb on - strand, within ravA at 4734.367 kb on + strand at 4734.466 kb on - strand at 4734.492 kb on + strand at 4734.579 kb on + strand at 4734.585 kb on + strand at 4734.585 kb on + strand at 4734.589 kb on + strand at 4734.589 kb on + strand at 4734.590 kb on - strand at 4734.590 kb on - strand at 4734.609 kb on + strand at 4734.609 kb on + strand at 4734.609 kb on + strand at 4734.609 kb on + strand at 4734.676 kb on + strand at 4734.676 kb on + strand at 4734.676 kb on + strand at 4734.681 kb on + strand at 4734.742 kb on + strand at 4734.769 kb on + strand at 4734.769 kb on + strand at 4734.771 kb on + strand at 4734.828 kb on - strand at 4734.883 kb on + strand, within kup at 4734.883 kb on + strand, within kup at 4734.883 kb on + strand, within kup at 4734.884 kb on - strand, within kup at 4734.892 kb on + strand, within kup at 4735.105 kb on + strand, within kup at 4735.107 kb on + strand, within kup at 4735.309 kb on + strand, within kup at 4735.375 kb on + strand, within kup at 4735.375 kb on + strand, within kup at 4735.457 kb on - strand, within kup at 4735.498 kb on - strand, within kup at 4735.666 kb on - strand, within kup at 4735.666 kb on - strand, within kup at 4735.693 kb on + strand, within kup at 4735.704 kb on - strand, within kup at 4735.708 kb on - strand, within kup at 4735.708 kb on - strand, within kup at 4735.828 kb on - strand, within kup at 4736.116 kb on + strand, within kup at 4736.116 kb on + strand, within kup at 4736.116 kb on + strand, within kup at 4736.117 kb on - strand, within kup at 4736.117 kb on - strand, within kup at 4736.118 kb on + strand, within kup at 4736.118 kb on + strand, within kup at 4736.118 kb on + strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.119 kb on - strand, within kup at 4736.230 kb on + strand, within kup at 4736.230 kb on + strand, within kup at 4736.230 kb on + strand, within kup at 4736.231 kb on - strand, within kup at 4736.299 kb on + strand, within kup at 4736.333 kb on + strand, within kup at 4736.334 kb on - strand, within kup at 4736.391 kb on + strand at 4736.432 kb on - strand at 4736.522 kb on + strand at 4736.522 kb on + strand at 4736.783 kb on - strand at 4736.799 kb on - strand at 4736.799 kb on - strand at 4736.802 kb on - strand at 4736.895 kb on - strand at 4736.910 kb on + strand at 4736.911 kb on - strand at 4737.040 kb on - strand, within LU632_RS24845 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.275 kb on - strand, within LU632_RS24850 at 4737.391 kb on + strand, within LU632_RS24850 at 4737.448 kb on - strand, within LU632_RS24850 at 4737.448 kb on - strand, within LU632_RS24850 at 4737.453 kb on - strand, within LU632_RS24850 at 4737.533 kb on + strand, within LU632_RS24850
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,733,682 + ravA LU632_RS24835 0.51 +0.2 4,733,684 + ravA LU632_RS24835 0.51 -0.0 4,733,789 + ravA LU632_RS24835 0.58 -0.4 4,733,805 + ravA LU632_RS24835 0.59 -0.3 4,734,027 + ravA LU632_RS24835 0.74 +1.1 4,734,027 + ravA LU632_RS24835 0.74 +0.4 4,734,028 - ravA LU632_RS24835 0.74 -0.5 4,734,031 - ravA LU632_RS24835 0.74 -0.0 4,734,054 + ravA LU632_RS24835 0.75 +0.4 4,734,074 - ravA LU632_RS24835 0.77 +0.3 4,734,209 + ravA LU632_RS24835 0.86 +0.1 4,734,210 - ravA LU632_RS24835 0.86 -0.8 4,734,367 + +1.5 4,734,466 - -0.0 4,734,492 + -0.9 4,734,579 + +0.0 4,734,585 + +0.1 4,734,585 + +0.5 4,734,589 + +0.8 4,734,589 + +0.3 4,734,590 - +0.4 4,734,590 - +0.4 4,734,609 + -0.1 4,734,609 + +0.1 4,734,609 + +0.5 4,734,609 + -1.4 4,734,676 + -0.2 4,734,676 + -0.1 4,734,676 + -0.2 4,734,681 + +1.5 4,734,742 + -0.3 4,734,769 + -0.6 4,734,769 + -1.1 4,734,771 + -0.4 4,734,828 - -0.4 4,734,883 + kup LU632_RS24840 0.11 -0.6 4,734,883 + kup LU632_RS24840 0.11 -1.5 4,734,883 + kup LU632_RS24840 0.11 -0.4 4,734,884 - kup LU632_RS24840 0.11 -0.7 4,734,892 + kup LU632_RS24840 0.11 -0.1 4,735,105 + kup LU632_RS24840 0.23 -1.3 4,735,107 + kup LU632_RS24840 0.23 -0.0 4,735,309 + kup LU632_RS24840 0.34 -1.2 4,735,375 + kup LU632_RS24840 0.37 -1.1 4,735,375 + kup LU632_RS24840 0.37 -1.0 4,735,457 - kup LU632_RS24840 0.41 -0.7 4,735,498 - kup LU632_RS24840 0.44 +0.4 4,735,666 - kup LU632_RS24840 0.53 -0.1 4,735,666 - kup LU632_RS24840 0.53 -1.1 4,735,693 + kup LU632_RS24840 0.54 -2.1 4,735,704 - kup LU632_RS24840 0.55 +1.6 4,735,708 - kup LU632_RS24840 0.55 -0.9 4,735,708 - kup LU632_RS24840 0.55 -0.7 4,735,828 - kup LU632_RS24840 0.61 -0.9 4,736,116 + kup LU632_RS24840 0.77 -0.9 4,736,116 + kup LU632_RS24840 0.77 -1.9 4,736,116 + kup LU632_RS24840 0.77 -0.2 4,736,117 - kup LU632_RS24840 0.77 +0.6 4,736,117 - kup LU632_RS24840 0.77 -0.7 4,736,118 + kup LU632_RS24840 0.77 -2.1 4,736,118 + kup LU632_RS24840 0.77 -0.3 4,736,118 + kup LU632_RS24840 0.77 -1.0 4,736,119 - kup LU632_RS24840 0.77 -1.9 4,736,119 - kup LU632_RS24840 0.77 +1.2 4,736,119 - kup LU632_RS24840 0.77 -1.1 4,736,119 - kup LU632_RS24840 0.77 +0.0 4,736,119 - kup LU632_RS24840 0.77 -0.7 4,736,119 - kup LU632_RS24840 0.77 -0.1 4,736,119 - kup LU632_RS24840 0.77 +1.5 4,736,230 + kup LU632_RS24840 0.83 +0.3 4,736,230 + kup LU632_RS24840 0.83 -0.8 4,736,230 + kup LU632_RS24840 0.83 -0.3 4,736,231 - kup LU632_RS24840 0.83 +0.3 4,736,299 + kup LU632_RS24840 0.87 -0.7 4,736,333 + kup LU632_RS24840 0.88 -0.9 4,736,334 - kup LU632_RS24840 0.88 -1.9 4,736,391 + +0.1 4,736,432 - -1.2 4,736,522 + +0.1 4,736,522 + -0.7 4,736,783 - +0.7 4,736,799 - +0.6 4,736,799 - -0.3 4,736,802 - +0.5 4,736,895 - -0.1 4,736,910 + +1.0 4,736,911 - -0.1 4,737,040 - LU632_RS24845 0.44 +0.1 4,737,275 - LU632_RS24850 0.19 -1.3 4,737,275 - LU632_RS24850 0.19 -0.3 4,737,275 - LU632_RS24850 0.19 +0.5 4,737,275 - LU632_RS24850 0.19 -0.0 4,737,275 - LU632_RS24850 0.19 +0.5 4,737,275 - LU632_RS24850 0.19 +0.6 4,737,391 + LU632_RS24850 0.39 +1.2 4,737,448 - LU632_RS24850 0.49 -0.1 4,737,448 - LU632_RS24850 0.49 -0.5 4,737,453 - LU632_RS24850 0.50 -0.2 4,737,533 + LU632_RS24850 0.64 +0.5
Or see this region's nucleotide sequence