Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24360 and LU632_RS24365 are separated by 196 nucleotides LU632_RS24365 and LU632_RS24370 are separated by 80 nucleotides LU632_RS24370 and LU632_RS24375 are separated by 143 nucleotides LU632_RS24375 and tnpA are separated by 65 nucleotides tnpA and ilvC are separated by 179 nucleotides
LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760
_RS24360
LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514
_RS24365
LU632_RS24370: LU632_RS24370 - IS91 family transposase, at 4,647,595 to 4,648,818
_RS24370
LU632_RS24375: LU632_RS24375 - IS6 family transposase, at 4,648,962 to 4,649,114
_RS24375
LU632_RS24380: tnpA - IS200/IS605 family transposase, at 4,649,180 to 4,649,486
tnpA
LU632_RS24385: ilvC - ketol-acid reductoisomerase, at 4,649,666 to 4,651,144
ilvC
Position (kb) 4647
4648
4649 Strain fitness (log2 ratio) -1
0
1 at 4646.798 kb on - strand at 4649.149 kb on + strand at 4649.203 kb on - strand at 4649.363 kb on - strand, within tnpA at 4649.363 kb on - strand, within tnpA at 4649.375 kb on - strand, within tnpA at 4649.430 kb on + strand, within tnpA at 4649.440 kb on + strand, within tnpA at 4649.450 kb on + strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.683 kb on + strand at 4649.683 kb on + strand at 4649.703 kb on + strand at 4649.703 kb on + strand at 4649.703 kb on + strand at 4649.704 kb on - strand at 4649.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,646,798 - +0.9 4,649,149 + -0.4 4,649,203 - +0.2 4,649,363 - tnpA LU632_RS24380 0.60 -0.5 4,649,363 - tnpA LU632_RS24380 0.60 +0.4 4,649,375 - tnpA LU632_RS24380 0.64 +0.0 4,649,430 + tnpA LU632_RS24380 0.81 -0.4 4,649,440 + tnpA LU632_RS24380 0.85 -0.5 4,649,450 + tnpA LU632_RS24380 0.88 -1.2 4,649,451 - tnpA LU632_RS24380 0.88 -0.3 4,649,451 - tnpA LU632_RS24380 0.88 -0.2 4,649,451 - tnpA LU632_RS24380 0.88 -0.5 4,649,453 - tnpA LU632_RS24380 0.89 +0.0 4,649,453 - tnpA LU632_RS24380 0.89 -0.2 4,649,453 - tnpA LU632_RS24380 0.89 +0.5 4,649,455 - tnpA LU632_RS24380 0.90 -0.3 4,649,455 - tnpA LU632_RS24380 0.90 -0.1 4,649,455 - tnpA LU632_RS24380 0.90 -0.2 4,649,683 + +0.7 4,649,683 + +0.9 4,649,703 + -0.3 4,649,703 + -1.4 4,649,703 + +0.3 4,649,704 - +0.7 4,649,704 - +0.1
Or see this region's nucleotide sequence