Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and hemD overlap by 4 nucleotides hemD and hemX are separated by 24 nucleotides hemX and hemY are separated by 2 nucleotides
LU632_RS24160: hemC - hydroxymethylbilane synthase, at 4,609,507 to 4,610,448
hemC
LU632_RS24165: hemD - uroporphyrinogen-III synthase, at 4,610,445 to 4,611,185
hemD
LU632_RS24170: hemX - uroporphyrinogen-III C-methyltransferase, at 4,611,210 to 4,612,346
hemX
LU632_RS24175: hemY - protoheme IX biogenesis protein HemY, at 4,612,349 to 4,613,539
hemY
Position (kb) 4611
4612
4613 Strain fitness (log2 ratio) -2
-1
0
1 at 4611.183 kb on + strand at 4611.201 kb on + strand at 4611.335 kb on + strand, within hemX at 4611.336 kb on - strand, within hemX at 4611.365 kb on + strand, within hemX at 4611.366 kb on - strand, within hemX at 4611.366 kb on - strand, within hemX at 4611.375 kb on - strand, within hemX at 4611.641 kb on + strand, within hemX at 4611.641 kb on + strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.642 kb on - strand, within hemX at 4611.751 kb on + strand, within hemX at 4611.796 kb on - strand, within hemX at 4611.827 kb on - strand, within hemX at 4611.830 kb on + strand, within hemX at 4611.917 kb on - strand, within hemX at 4611.917 kb on - strand, within hemX at 4611.953 kb on + strand, within hemX at 4611.954 kb on - strand, within hemX at 4611.971 kb on + strand, within hemX at 4611.971 kb on + strand, within hemX at 4612.019 kb on + strand, within hemX at 4612.020 kb on - strand, within hemX at 4612.105 kb on - strand, within hemX at 4612.115 kb on + strand, within hemX at 4612.115 kb on + strand, within hemX at 4612.180 kb on - strand, within hemX at 4612.221 kb on - strand, within hemX at 4612.354 kb on + strand at 4612.361 kb on - strand at 4612.361 kb on - strand at 4612.366 kb on - strand at 4612.428 kb on - strand at 4612.486 kb on + strand, within hemY at 4612.624 kb on - strand, within hemY at 4612.709 kb on + strand, within hemY at 4612.710 kb on - strand, within hemY at 4612.831 kb on + strand, within hemY at 4612.937 kb on + strand, within hemY at 4613.028 kb on + strand, within hemY at 4613.167 kb on + strand, within hemY at 4613.168 kb on - strand, within hemY at 4613.339 kb on + strand, within hemY
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,611,183 + +0.6 4,611,201 + -2.6 4,611,335 + hemX LU632_RS24170 0.11 -0.7 4,611,336 - hemX LU632_RS24170 0.11 +1.7 4,611,365 + hemX LU632_RS24170 0.14 +0.3 4,611,366 - hemX LU632_RS24170 0.14 -0.7 4,611,366 - hemX LU632_RS24170 0.14 -1.4 4,611,375 - hemX LU632_RS24170 0.15 -0.4 4,611,641 + hemX LU632_RS24170 0.38 -2.1 4,611,641 + hemX LU632_RS24170 0.38 -0.1 4,611,642 - hemX LU632_RS24170 0.38 -2.2 4,611,642 - hemX LU632_RS24170 0.38 -0.1 4,611,642 - hemX LU632_RS24170 0.38 -1.2 4,611,751 + hemX LU632_RS24170 0.48 +0.3 4,611,796 - hemX LU632_RS24170 0.52 -2.4 4,611,827 - hemX LU632_RS24170 0.54 -1.1 4,611,830 + hemX LU632_RS24170 0.55 -1.7 4,611,917 - hemX LU632_RS24170 0.62 -1.4 4,611,917 - hemX LU632_RS24170 0.62 -0.4 4,611,953 + hemX LU632_RS24170 0.65 +1.3 4,611,954 - hemX LU632_RS24170 0.65 +0.3 4,611,971 + hemX LU632_RS24170 0.67 +0.0 4,611,971 + hemX LU632_RS24170 0.67 +0.2 4,612,019 + hemX LU632_RS24170 0.71 +0.1 4,612,020 - hemX LU632_RS24170 0.71 -1.1 4,612,105 - hemX LU632_RS24170 0.79 -0.4 4,612,115 + hemX LU632_RS24170 0.80 -0.1 4,612,115 + hemX LU632_RS24170 0.80 -0.7 4,612,180 - hemX LU632_RS24170 0.85 -0.8 4,612,221 - hemX LU632_RS24170 0.89 -1.2 4,612,354 + +0.6 4,612,361 - +0.3 4,612,361 - -1.1 4,612,366 - -1.1 4,612,428 - -1.1 4,612,486 + hemY LU632_RS24175 0.12 -1.1 4,612,624 - hemY LU632_RS24175 0.23 -1.4 4,612,709 + hemY LU632_RS24175 0.30 -0.3 4,612,710 - hemY LU632_RS24175 0.30 +0.3 4,612,831 + hemY LU632_RS24175 0.40 -1.1 4,612,937 + hemY LU632_RS24175 0.49 -0.9 4,613,028 + hemY LU632_RS24175 0.57 -0.5 4,613,167 + hemY LU632_RS24175 0.69 -0.0 4,613,168 - hemY LU632_RS24175 0.69 +1.4 4,613,339 + hemY LU632_RS24175 0.83 -0.9
Or see this region's nucleotide sequence