Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt corA and LU632_RS24120 are separated by 274 nucleotides LU632_RS24120 and uvrD are separated by 287 nucleotides
LU632_RS24115: corA - magnesium/cobalt transporter CorA, at 4,598,893 to 4,599,846
corA
LU632_RS24120: LU632_RS24120 - WbuC family cupin fold metalloprotein, at 4,600,121 to 4,600,594
_RS24120
LU632_RS24125: uvrD - DNA helicase II, at 4,600,882 to 4,603,044
uvrD
Position (kb) 4600
4601 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4599.985 kb on - strand at 4599.987 kb on - strand at 4599.987 kb on - strand at 4600.110 kb on + strand at 4600.129 kb on + strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.263 kb on + strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.264 kb on + strand, within LU632_RS24120 at 4600.389 kb on + strand, within LU632_RS24120 at 4600.475 kb on + strand, within LU632_RS24120 at 4600.549 kb on - strand at 4600.633 kb on + strand at 4600.777 kb on + strand at 4600.777 kb on + strand at 4600.778 kb on - strand at 4600.924 kb on - strand at 4600.992 kb on + strand at 4600.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,599,985 - +1.5 4,599,987 - -0.1 4,599,987 - +0.9 4,600,110 + +0.0 4,600,129 + +0.1 4,600,130 - -1.2 4,600,130 - -0.9 4,600,130 - +0.2 4,600,130 - -0.3 4,600,262 + LU632_RS24120 0.30 +0.2 4,600,262 + LU632_RS24120 0.30 -1.1 4,600,262 + LU632_RS24120 0.30 -1.1 4,600,262 + LU632_RS24120 0.30 -0.6 4,600,262 + LU632_RS24120 0.30 -0.8 4,600,262 + LU632_RS24120 0.30 +1.5 4,600,262 + LU632_RS24120 0.30 +0.7 4,600,262 + LU632_RS24120 0.30 +0.3 4,600,262 + LU632_RS24120 0.30 +0.5 4,600,262 + LU632_RS24120 0.30 -0.6 4,600,262 + LU632_RS24120 0.30 +0.9 4,600,262 + LU632_RS24120 0.30 -1.1 4,600,262 + LU632_RS24120 0.30 -2.8 4,600,263 + LU632_RS24120 0.30 -0.7 4,600,263 - LU632_RS24120 0.30 +0.6 4,600,263 - LU632_RS24120 0.30 -0.4 4,600,263 - LU632_RS24120 0.30 +0.4 4,600,263 - LU632_RS24120 0.30 -0.1 4,600,263 - LU632_RS24120 0.30 +0.1 4,600,263 - LU632_RS24120 0.30 -0.1 4,600,263 - LU632_RS24120 0.30 -0.5 4,600,263 - LU632_RS24120 0.30 -0.7 4,600,263 - LU632_RS24120 0.30 -0.5 4,600,263 - LU632_RS24120 0.30 -0.3 4,600,263 - LU632_RS24120 0.30 +0.1 4,600,263 - LU632_RS24120 0.30 -1.2 4,600,263 - LU632_RS24120 0.30 -0.6 4,600,263 - LU632_RS24120 0.30 +0.5 4,600,263 - LU632_RS24120 0.30 +0.1 4,600,263 - LU632_RS24120 0.30 +0.2 4,600,263 - LU632_RS24120 0.30 +0.3 4,600,263 - LU632_RS24120 0.30 +0.1 4,600,263 - LU632_RS24120 0.30 -0.1 4,600,264 + LU632_RS24120 0.30 +0.9 4,600,389 + LU632_RS24120 0.57 +0.6 4,600,475 + LU632_RS24120 0.75 -1.1 4,600,549 - -0.1 4,600,633 + -2.1 4,600,777 + -0.1 4,600,777 + -0.0 4,600,778 - -0.1 4,600,924 - -0.4 4,600,992 + -0.8 4,600,993 - -0.0
Or see this region's nucleotide sequence