Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23400

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS23395 and LU632_RS23400 are separated by 84 nucleotidesLU632_RS23400 and LU632_RS23405 are separated by 488 nucleotides LU632_RS23395: LU632_RS23395 - IS91 family transposase, at 4,458,899 to 4,460,122 _RS23395 LU632_RS23400: LU632_RS23400 - transposase, at 4,460,207 to 4,460,473 _RS23400 LU632_RS23405: LU632_RS23405 - IS6 family transposase, at 4,460,962 to 4,461,658 _RS23405 Position (kb) 4460 4461Strain fitness (log2 ratio) -1 0 1at 4460.692 kb on - strandat 4460.722 kb on - strandat 4460.793 kb on - strandat 4460.824 kb on - strandat 4460.824 kb on - strandat 4460.864 kb on - strandat 4460.866 kb on - strandat 4460.866 kb on - strandat 4460.871 kb on + strandat 4461.235 kb on + strand, within LU632_RS23405

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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4,460,692 - -0.9
4,460,722 - +0.7
4,460,793 - +0.2
4,460,824 - -0.3
4,460,824 - -0.1
4,460,864 - -0.4
4,460,866 - +1.3
4,460,866 - +0.5
4,460,871 + +0.4
4,461,235 + LU632_RS23405 0.39 +0.1

Or see this region's nucleotide sequence