Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmL and cysE overlap by 4 nucleotides cysE and gpsA are separated by 65 nucleotides gpsA and secB overlap by 1 nucleotides secB and grxC are separated by 42 nucleotides grxC and LU632_RS21890 are separated by 18 nucleotides
LU632_RS21865: trmL - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 4,177,505 to 4,177,981
trmL
LU632_RS21870: cysE - serine O-acetyltransferase, at 4,177,978 to 4,178,799
cysE
LU632_RS21875: gpsA - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 4,178,865 to 4,179,884
gpsA
LU632_RS21880: secB - protein-export chaperone SecB, at 4,179,884 to 4,180,351
secB
LU632_RS21885: grxC - glutaredoxin 3, at 4,180,394 to 4,180,645
grxC
LU632_RS21890: LU632_RS21890 - rhodanese-like domain-containing protein, at 4,180,664 to 4,181,095
_RS21890
Position (kb) 4178
4179
4180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4177.874 kb on - strand, within trmL at 4177.874 kb on - strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.928 kb on + strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.929 kb on - strand, within trmL at 4177.952 kb on + strand at 4177.969 kb on + strand at 4178.820 kb on - strand at 4178.820 kb on - strand at 4178.844 kb on - strand at 4178.844 kb on - strand at 4178.911 kb on - strand at 4178.911 kb on - strand at 4178.947 kb on - strand at 4178.947 kb on - strand at 4178.966 kb on + strand at 4178.967 kb on - strand, within gpsA at 4179.119 kb on + strand, within gpsA at 4179.119 kb on + strand, within gpsA at 4179.126 kb on - strand, within gpsA at 4179.164 kb on + strand, within gpsA at 4179.165 kb on - strand, within gpsA at 4179.171 kb on - strand, within gpsA at 4179.315 kb on + strand, within gpsA at 4179.341 kb on + strand, within gpsA at 4179.372 kb on + strand, within gpsA at 4179.373 kb on - strand, within gpsA at 4179.373 kb on - strand, within gpsA at 4179.376 kb on - strand, within gpsA at 4179.399 kb on + strand, within gpsA at 4179.400 kb on - strand, within gpsA at 4179.400 kb on - strand, within gpsA at 4179.495 kb on - strand, within gpsA at 4179.526 kb on - strand, within gpsA at 4179.529 kb on - strand, within gpsA at 4179.603 kb on - strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.714 kb on + strand, within gpsA at 4179.715 kb on - strand, within gpsA at 4179.735 kb on - strand, within gpsA at 4179.737 kb on + strand, within gpsA at 4179.738 kb on - strand, within gpsA at 4179.738 kb on - strand, within gpsA at 4179.776 kb on + strand, within gpsA at 4179.797 kb on + strand at 4179.798 kb on - strand at 4179.818 kb on + strand at 4179.818 kb on + strand at 4179.819 kb on - strand at 4179.885 kb on + strand at 4179.975 kb on - strand, within secB at 4179.975 kb on - strand, within secB at 4180.013 kb on - strand, within secB at 4180.050 kb on + strand, within secB at 4180.231 kb on + strand, within secB at 4180.231 kb on + strand, within secB at 4180.301 kb on - strand, within secB at 4180.301 kb on - strand, within secB at 4180.302 kb on + strand, within secB at 4180.303 kb on - strand, within secB at 4180.365 kb on - strand at 4180.396 kb on - strand at 4180.401 kb on - strand at 4180.475 kb on - strand, within grxC at 4180.546 kb on + strand, within grxC at 4180.754 kb on - strand, within LU632_RS21890
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,177,874 - trmL LU632_RS21865 0.77 -1.7 4,177,874 - trmL LU632_RS21865 0.77 +0.3 4,177,928 + trmL LU632_RS21865 0.89 -0.6 4,177,928 + trmL LU632_RS21865 0.89 -0.6 4,177,928 + trmL LU632_RS21865 0.89 +0.1 4,177,929 - trmL LU632_RS21865 0.89 +0.3 4,177,929 - trmL LU632_RS21865 0.89 -1.1 4,177,952 + -0.7 4,177,969 + +0.9 4,178,820 - +0.3 4,178,820 - +0.5 4,178,844 - +0.3 4,178,844 - +0.3 4,178,911 - -2.1 4,178,911 - -3.0 4,178,947 - -2.8 4,178,947 - -0.9 4,178,966 + +0.5 4,178,967 - gpsA LU632_RS21875 0.10 -3.2 4,179,119 + gpsA LU632_RS21875 0.25 -0.7 4,179,119 + gpsA LU632_RS21875 0.25 -2.3 4,179,126 - gpsA LU632_RS21875 0.26 -3.9 4,179,164 + gpsA LU632_RS21875 0.29 -1.9 4,179,165 - gpsA LU632_RS21875 0.29 -3.1 4,179,171 - gpsA LU632_RS21875 0.30 -3.0 4,179,315 + gpsA LU632_RS21875 0.44 -3.9 4,179,341 + gpsA LU632_RS21875 0.47 +0.9 4,179,372 + gpsA LU632_RS21875 0.50 -3.9 4,179,373 - gpsA LU632_RS21875 0.50 -2.7 4,179,373 - gpsA LU632_RS21875 0.50 -2.9 4,179,376 - gpsA LU632_RS21875 0.50 -1.7 4,179,399 + gpsA LU632_RS21875 0.52 -1.9 4,179,400 - gpsA LU632_RS21875 0.52 -2.4 4,179,400 - gpsA LU632_RS21875 0.52 -2.4 4,179,495 - gpsA LU632_RS21875 0.62 -2.9 4,179,526 - gpsA LU632_RS21875 0.65 -1.8 4,179,529 - gpsA LU632_RS21875 0.65 -3.5 4,179,603 - gpsA LU632_RS21875 0.72 -4.1 4,179,714 + gpsA LU632_RS21875 0.83 -3.0 4,179,714 + gpsA LU632_RS21875 0.83 -0.1 4,179,714 + gpsA LU632_RS21875 0.83 -1.9 4,179,715 - gpsA LU632_RS21875 0.83 -1.3 4,179,735 - gpsA LU632_RS21875 0.85 -4.0 4,179,737 + gpsA LU632_RS21875 0.85 -4.3 4,179,738 - gpsA LU632_RS21875 0.86 -2.7 4,179,738 - gpsA LU632_RS21875 0.86 -2.9 4,179,776 + gpsA LU632_RS21875 0.89 -1.9 4,179,797 + -0.7 4,179,798 - -2.7 4,179,818 + -2.3 4,179,818 + -1.7 4,179,819 - -3.1 4,179,885 + -2.1 4,179,975 - secB LU632_RS21880 0.19 +0.2 4,179,975 - secB LU632_RS21880 0.19 +1.9 4,180,013 - secB LU632_RS21880 0.28 -1.9 4,180,050 + secB LU632_RS21880 0.35 -0.7 4,180,231 + secB LU632_RS21880 0.74 -2.7 4,180,231 + secB LU632_RS21880 0.74 -3.2 4,180,301 - secB LU632_RS21880 0.89 -0.5 4,180,301 - secB LU632_RS21880 0.89 +0.2 4,180,302 + secB LU632_RS21880 0.89 -1.4 4,180,303 - secB LU632_RS21880 0.90 -0.8 4,180,365 - -0.2 4,180,396 - +0.3 4,180,401 - +0.0 4,180,475 - grxC LU632_RS21885 0.32 +0.9 4,180,546 + grxC LU632_RS21885 0.60 -2.4 4,180,754 - LU632_RS21890 0.21 -1.3
Or see this region's nucleotide sequence