Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21245

Experiment: CucXylem

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CucXylem
4,055,704	+	mlaD	LU632_RS21235	0.69	-0.1
4,055,705	-	mlaD	LU632_RS21235	0.69	-0.8
4,055,752	-	mlaD	LU632_RS21235	0.77	-0.9
4,055,838	-				-0.7
4,055,850	-				-1.1
4,056,027	+	mlaE	LU632_RS21240	0.18	-0.7
4,056,028	-	mlaE	LU632_RS21240	0.19	-0.7
4,056,071	+	mlaE	LU632_RS21240	0.24	-0.5
4,056,101	+	mlaE	LU632_RS21240	0.28	+1.7
4,056,122	+	mlaE	LU632_RS21240	0.31	+1.3
4,056,166	-	mlaE	LU632_RS21240	0.36	-1.2
4,056,381	+	mlaE	LU632_RS21240	0.64	-1.1
4,056,424	+	mlaE	LU632_RS21240	0.69	+0.9
4,056,425	-	mlaE	LU632_RS21240	0.69	-1.6
4,056,590	+				+0.3
4,056,590	+				-1.5
4,056,620	+				+0.9
4,056,620	+				-0.4
4,056,623	+				-0.8
4,056,675	-				-1.2
4,056,675	-				-0.7
4,056,704	+				-0.8
4,056,775	-	mlaF	LU632_RS21245	0.13	-1.3
4,056,775	-	mlaF	LU632_RS21245	0.13	-1.2
4,056,839	+	mlaF	LU632_RS21245	0.20	-0.6
4,056,840	-	mlaF	LU632_RS21245	0.21	+0.1
4,056,845	+	mlaF	LU632_RS21245	0.21	-1.1
4,056,845	+	mlaF	LU632_RS21245	0.21	-0.1
4,056,928	+	mlaF	LU632_RS21245	0.31	-0.5
4,056,992	-	mlaF	LU632_RS21245	0.39	-1.1
4,057,146	+	mlaF	LU632_RS21245	0.58	+0.4
4,057,146	+	mlaF	LU632_RS21245	0.58	-1.7
4,057,146	+	mlaF	LU632_RS21245	0.58	-0.6
4,057,146	+	mlaF	LU632_RS21245	0.58	-1.7
4,057,194	+	mlaF	LU632_RS21245	0.64	-0.9
4,057,198	+	mlaF	LU632_RS21245	0.65	-2.0
4,057,199	-	mlaF	LU632_RS21245	0.65	+0.3
4,057,237	+	mlaF	LU632_RS21245	0.69	-0.3
4,057,328	-	mlaF	LU632_RS21245	0.81	+0.6
4,057,408	-				-1.0
4,057,408	-				-0.7
4,057,460	-				-1.3
4,057,517	-				-0.2
4,057,532	-				-0.8
4,057,561	+				-0.2
4,057,562	-				+0.8
4,057,562	-				-0.1
4,057,571	+				+0.3
4,057,571	+				-0.5
4,057,572	-				-1.4
4,057,660	-				-0.5
4,057,757	+				-0.4
4,057,759	+				+0.3
4,057,759	+				+0.2
4,057,759	+				+0.4
4,057,782	+				+0.3
4,057,844	+		LU632_RS21250	0.13	-0.7
4,057,932	-		LU632_RS21250	0.22	-0.7
4,057,947	+		LU632_RS21250	0.24	+0.9
4,058,125	+		LU632_RS21250	0.42	+0.0
4,058,169	+		LU632_RS21250	0.46	+0.9
4,058,172	+		LU632_RS21250	0.47	-1.0
4,058,265	+		LU632_RS21250	0.56	-0.1
4,058,461	+		LU632_RS21250	0.76	+0.0