Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS20565 and ftsP are separated by 379 nucleotides ftsP and LU632_RS20575 are separated by 91 nucleotides LU632_RS20575 and parC are separated by 87 nucleotides
LU632_RS20565: LU632_RS20565 - DUF1471 domain-containing protein, at 3,915,749 to 3,916,018
_RS20565
LU632_RS20570: ftsP - cell division protein FtsP, at 3,916,398 to 3,917,813
ftsP
LU632_RS20575: LU632_RS20575 - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,917,905 to 3,918,642
_RS20575
LU632_RS20580: parC - DNA topoisomerase IV subunit A, at 3,918,730 to 3,921,003
parC
Position (kb) 3916
3917
3918 Strain fitness (log2 ratio) -2
-1
0
1 at 3915.410 kb on + strand at 3915.527 kb on - strand at 3915.840 kb on - strand, within LU632_RS20565 at 3915.873 kb on + strand, within LU632_RS20565 at 3915.940 kb on + strand, within LU632_RS20565 at 3915.940 kb on + strand, within LU632_RS20565 at 3915.941 kb on - strand, within LU632_RS20565 at 3915.944 kb on + strand, within LU632_RS20565 at 3916.048 kb on + strand at 3916.056 kb on - strand at 3916.144 kb on + strand at 3916.252 kb on + strand at 3916.252 kb on + strand at 3916.253 kb on - strand at 3916.283 kb on + strand at 3916.283 kb on + strand at 3916.284 kb on - strand at 3916.300 kb on + strand at 3916.395 kb on + strand at 3916.469 kb on - strand at 3916.469 kb on - strand at 3916.469 kb on - strand at 3916.472 kb on + strand at 3916.473 kb on - strand at 3916.503 kb on - strand at 3916.571 kb on + strand, within ftsP at 3916.646 kb on - strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.663 kb on + strand, within ftsP at 3916.664 kb on - strand, within ftsP at 3916.664 kb on - strand, within ftsP at 3916.667 kb on + strand, within ftsP at 3916.668 kb on - strand, within ftsP at 3916.794 kb on + strand, within ftsP at 3917.032 kb on + strand, within ftsP at 3917.184 kb on - strand, within ftsP at 3917.259 kb on - strand, within ftsP at 3917.309 kb on + strand, within ftsP at 3917.313 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.542 kb on + strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.552 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.594 kb on - strand, within ftsP at 3917.713 kb on - strand at 3917.813 kb on + strand at 3917.866 kb on - strand at 3917.873 kb on + strand at 3917.873 kb on + strand at 3917.889 kb on + strand at 3917.889 kb on + strand at 3918.686 kb on + strand at 3918.687 kb on - strand at 3918.713 kb on - strand at 3918.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 3,915,410 + -0.1 3,915,527 - +0.2 3,915,840 - LU632_RS20565 0.34 +0.8 3,915,873 + LU632_RS20565 0.46 -0.5 3,915,940 + LU632_RS20565 0.71 +0.2 3,915,940 + LU632_RS20565 0.71 +0.2 3,915,941 - LU632_RS20565 0.71 +0.2 3,915,944 + LU632_RS20565 0.72 -0.3 3,916,048 + -0.5 3,916,056 - +1.3 3,916,144 + +0.2 3,916,252 + -1.5 3,916,252 + +1.2 3,916,253 - +0.2 3,916,283 + +0.1 3,916,283 + +0.5 3,916,284 - +0.0 3,916,300 + +0.1 3,916,395 + -0.5 3,916,469 - -0.6 3,916,469 - +0.5 3,916,469 - +1.6 3,916,472 + +0.5 3,916,473 - +0.4 3,916,503 - -1.2 3,916,571 + ftsP LU632_RS20570 0.12 -1.0 3,916,646 - ftsP LU632_RS20570 0.18 +0.3 3,916,663 + ftsP LU632_RS20570 0.19 -0.2 3,916,663 + ftsP LU632_RS20570 0.19 +0.2 3,916,663 + ftsP LU632_RS20570 0.19 -0.4 3,916,664 - ftsP LU632_RS20570 0.19 +1.4 3,916,664 - ftsP LU632_RS20570 0.19 +0.0 3,916,667 + ftsP LU632_RS20570 0.19 -0.1 3,916,668 - ftsP LU632_RS20570 0.19 +0.1 3,916,794 + ftsP LU632_RS20570 0.28 +0.1 3,917,032 + ftsP LU632_RS20570 0.45 +0.5 3,917,184 - ftsP LU632_RS20570 0.56 -0.3 3,917,259 - ftsP LU632_RS20570 0.61 -0.2 3,917,309 + ftsP LU632_RS20570 0.64 +1.6 3,917,313 + ftsP LU632_RS20570 0.65 +0.7 3,917,353 + ftsP LU632_RS20570 0.67 -0.4 3,917,353 + ftsP LU632_RS20570 0.67 +0.9 3,917,353 + ftsP LU632_RS20570 0.67 +0.5 3,917,353 + ftsP LU632_RS20570 0.67 -0.5 3,917,354 - ftsP LU632_RS20570 0.68 +0.2 3,917,354 - ftsP LU632_RS20570 0.68 -0.8 3,917,354 - ftsP LU632_RS20570 0.68 +0.0 3,917,354 - ftsP LU632_RS20570 0.68 -0.2 3,917,354 - ftsP LU632_RS20570 0.68 -0.5 3,917,354 - ftsP LU632_RS20570 0.68 -0.9 3,917,354 - ftsP LU632_RS20570 0.68 -0.2 3,917,354 - ftsP LU632_RS20570 0.68 +0.8 3,917,355 + ftsP LU632_RS20570 0.68 +0.6 3,917,355 + ftsP LU632_RS20570 0.68 -0.4 3,917,355 + ftsP LU632_RS20570 0.68 -0.3 3,917,355 + ftsP LU632_RS20570 0.68 -0.1 3,917,356 - ftsP LU632_RS20570 0.68 -0.2 3,917,356 - ftsP LU632_RS20570 0.68 -0.6 3,917,356 - ftsP LU632_RS20570 0.68 +0.0 3,917,356 - ftsP LU632_RS20570 0.68 -1.0 3,917,356 - ftsP LU632_RS20570 0.68 -0.7 3,917,356 - ftsP LU632_RS20570 0.68 -1.2 3,917,356 - ftsP LU632_RS20570 0.68 -0.4 3,917,356 - ftsP LU632_RS20570 0.68 -1.1 3,917,356 - ftsP LU632_RS20570 0.68 +0.6 3,917,357 + ftsP LU632_RS20570 0.68 -1.0 3,917,357 + ftsP LU632_RS20570 0.68 -0.4 3,917,357 + ftsP LU632_RS20570 0.68 -0.2 3,917,357 + ftsP LU632_RS20570 0.68 +1.0 3,917,358 - ftsP LU632_RS20570 0.68 -0.7 3,917,358 - ftsP LU632_RS20570 0.68 +0.0 3,917,358 - ftsP LU632_RS20570 0.68 -0.9 3,917,358 - ftsP LU632_RS20570 0.68 +0.5 3,917,358 - ftsP LU632_RS20570 0.68 -0.3 3,917,358 - ftsP LU632_RS20570 0.68 -0.0 3,917,358 - ftsP LU632_RS20570 0.68 +0.6 3,917,358 - ftsP LU632_RS20570 0.68 +0.0 3,917,358 - ftsP LU632_RS20570 0.68 +0.1 3,917,542 + ftsP LU632_RS20570 0.81 +0.3 3,917,543 - ftsP LU632_RS20570 0.81 +0.0 3,917,543 - ftsP LU632_RS20570 0.81 +0.0 3,917,543 - ftsP LU632_RS20570 0.81 -1.5 3,917,552 + ftsP LU632_RS20570 0.81 +0.8 3,917,593 + ftsP LU632_RS20570 0.84 -0.4 3,917,593 + ftsP LU632_RS20570 0.84 +0.2 3,917,594 - ftsP LU632_RS20570 0.84 -0.5 3,917,713 - -0.2 3,917,813 + +0.1 3,917,866 - -0.3 3,917,873 + +0.0 3,917,873 + +0.3 3,917,889 + +0.0 3,917,889 + +0.2 3,918,686 + -2.0 3,918,687 - +0.0 3,918,713 - +1.3 3,918,768 + +0.8
Or see this region's nucleotide sequence