Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18950

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18940 and LU632_RS18945 are separated by 15 nucleotidesLU632_RS18945 and LU632_RS18950 are separated by 24 nucleotidesLU632_RS18950 and rdgC are separated by 329 nucleotides LU632_RS18940: LU632_RS18940 - DUF799 domain-containing protein, at 3,576,710 to 3,577,345 _RS18940 LU632_RS18945: LU632_RS18945 - DUF4810 domain-containing protein, at 3,577,361 to 3,577,671 _RS18945 LU632_RS18950: LU632_RS18950 - hypothetical protein, at 3,577,696 to 3,578,033 _RS18950 LU632_RS18955: rdgC - recombination-associated protein RdgC, at 3,578,363 to 3,579,274 rdgC Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -2 -1 0 1at 3576.779 kb on - strand, within LU632_RS18940at 3576.864 kb on - strand, within LU632_RS18940at 3576.870 kb on - strand, within LU632_RS18940at 3576.897 kb on - strand, within LU632_RS18940at 3577.007 kb on + strand, within LU632_RS18940at 3577.008 kb on - strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.009 kb on + strand, within LU632_RS18940at 3577.010 kb on - strand, within LU632_RS18940at 3577.010 kb on - strand, within LU632_RS18940at 3577.097 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.132 kb on + strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.133 kb on - strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.135 kb on + strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.136 kb on - strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.137 kb on + strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.138 kb on - strand, within LU632_RS18940at 3577.362 kb on + strandat 3577.366 kb on + strandat 3577.464 kb on + strand, within LU632_RS18945at 3577.465 kb on - strand, within LU632_RS18945at 3577.465 kb on - strand, within LU632_RS18945at 3577.555 kb on - strand, within LU632_RS18945at 3577.561 kb on - strand, within LU632_RS18945at 3577.566 kb on - strand, within LU632_RS18945at 3577.571 kb on + strand, within LU632_RS18945at 3577.572 kb on - strand, within LU632_RS18945at 3577.697 kb on + strandat 3577.799 kb on + strand, within LU632_RS18950at 3577.799 kb on + strand, within LU632_RS18950at 3577.800 kb on - strand, within LU632_RS18950at 3577.836 kb on + strand, within LU632_RS18950at 3577.841 kb on - strand, within LU632_RS18950at 3577.841 kb on - strand, within LU632_RS18950at 3577.845 kb on + strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.846 kb on - strand, within LU632_RS18950at 3577.847 kb on + strand, within LU632_RS18950at 3577.847 kb on + strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.848 kb on - strand, within LU632_RS18950at 3577.903 kb on - strand, within LU632_RS18950at 3577.922 kb on + strand, within LU632_RS18950at 3578.017 kb on + strandat 3578.031 kb on + strandat 3578.174 kb on - strandat 3578.258 kb on - strandat 3578.322 kb on + strandat 3578.327 kb on - strandat 3578.327 kb on - strandat 3578.336 kb on + strandat 3578.336 kb on + strandat 3578.336 kb on + strandat 3578.337 kb on - strandat 3578.340 kb on - strandat 3578.362 kb on + strandat 3578.388 kb on + strandat 3578.388 kb on + strandat 3578.388 kb on + strandat 3578.389 kb on - strandat 3578.389 kb on - strandat 3578.389 kb on - strandat 3578.389 kb on - strandat 3578.389 kb on - strandat 3578.603 kb on - strand, within rdgCat 3578.654 kb on - strand, within rdgCat 3578.765 kb on - strand, within rdgCat 3578.914 kb on + strand, within rdgCat 3578.915 kb on - strand, within rdgCat 3578.934 kb on + strand, within rdgC

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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3,576,779 - LU632_RS18940 0.11 +0.6
3,576,864 - LU632_RS18940 0.24 +0.9
3,576,870 - LU632_RS18940 0.25 +0.2
3,576,897 - LU632_RS18940 0.29 -0.4
3,577,007 + LU632_RS18940 0.47 -1.7
3,577,008 - LU632_RS18940 0.47 -1.1
3,577,009 + LU632_RS18940 0.47 -0.5
3,577,009 + LU632_RS18940 0.47 -0.5
3,577,009 + LU632_RS18940 0.47 -0.3
3,577,009 + LU632_RS18940 0.47 +0.1
3,577,010 - LU632_RS18940 0.47 -0.7
3,577,010 - LU632_RS18940 0.47 +0.9
3,577,097 + LU632_RS18940 0.61 -0.3
3,577,132 + LU632_RS18940 0.66 +0.1
3,577,132 + LU632_RS18940 0.66 +0.9
3,577,132 + LU632_RS18940 0.66 +0.4
3,577,132 + LU632_RS18940 0.66 -1.6
3,577,132 + LU632_RS18940 0.66 +0.2
3,577,132 + LU632_RS18940 0.66 -0.2
3,577,132 + LU632_RS18940 0.66 +0.7
3,577,133 - LU632_RS18940 0.67 +0.2
3,577,133 - LU632_RS18940 0.67 +0.8
3,577,133 - LU632_RS18940 0.67 +0.1
3,577,133 - LU632_RS18940 0.67 -0.5
3,577,133 - LU632_RS18940 0.67 +0.1
3,577,133 - LU632_RS18940 0.67 +0.2
3,577,133 - LU632_RS18940 0.67 +0.2
3,577,133 - LU632_RS18940 0.67 +0.1
3,577,135 + LU632_RS18940 0.67 -0.7
3,577,135 + LU632_RS18940 0.67 -0.6
3,577,135 + LU632_RS18940 0.67 -0.9
3,577,135 + LU632_RS18940 0.67 +0.7
3,577,135 + LU632_RS18940 0.67 +0.1
3,577,135 + LU632_RS18940 0.67 +0.7
3,577,135 + LU632_RS18940 0.67 +0.7
3,577,136 - LU632_RS18940 0.67 +1.3
3,577,136 - LU632_RS18940 0.67 +0.3
3,577,136 - LU632_RS18940 0.67 -0.1
3,577,136 - LU632_RS18940 0.67 -0.2
3,577,137 + LU632_RS18940 0.67 -0.3
3,577,137 + LU632_RS18940 0.67 -0.4
3,577,137 + LU632_RS18940 0.67 -0.4
3,577,137 + LU632_RS18940 0.67 +1.5
3,577,138 - LU632_RS18940 0.67 +0.6
3,577,138 - LU632_RS18940 0.67 +0.7
3,577,138 - LU632_RS18940 0.67 -0.1
3,577,138 - LU632_RS18940 0.67 -1.4
3,577,138 - LU632_RS18940 0.67 -0.4
3,577,138 - LU632_RS18940 0.67 +0.1
3,577,362 + -1.0
3,577,366 + -1.0
3,577,464 + LU632_RS18945 0.33 -0.3
3,577,465 - LU632_RS18945 0.33 +0.2
3,577,465 - LU632_RS18945 0.33 +0.4
3,577,555 - LU632_RS18945 0.62 +0.0
3,577,561 - LU632_RS18945 0.64 +1.4
3,577,566 - LU632_RS18945 0.66 -0.3
3,577,571 + LU632_RS18945 0.68 +0.3
3,577,572 - LU632_RS18945 0.68 -0.4
3,577,697 + +0.2
3,577,799 + LU632_RS18950 0.30 +0.6
3,577,799 + LU632_RS18950 0.30 -0.9
3,577,800 - LU632_RS18950 0.31 -0.0
3,577,836 + LU632_RS18950 0.41 +0.1
3,577,841 - LU632_RS18950 0.43 +0.3
3,577,841 - LU632_RS18950 0.43 +0.5
3,577,845 + LU632_RS18950 0.44 -0.1
3,577,846 - LU632_RS18950 0.44 -0.3
3,577,846 - LU632_RS18950 0.44 -0.6
3,577,846 - LU632_RS18950 0.44 -0.5
3,577,846 - LU632_RS18950 0.44 +0.6
3,577,846 - LU632_RS18950 0.44 -0.6
3,577,846 - LU632_RS18950 0.44 +0.5
3,577,846 - LU632_RS18950 0.44 +0.3
3,577,847 + LU632_RS18950 0.45 -0.2
3,577,847 + LU632_RS18950 0.45 +0.6
3,577,848 - LU632_RS18950 0.45 +1.2
3,577,848 - LU632_RS18950 0.45 +0.7
3,577,848 - LU632_RS18950 0.45 -0.4
3,577,903 - LU632_RS18950 0.61 -0.5
3,577,922 + LU632_RS18950 0.67 +0.2
3,578,017 + +0.2
3,578,031 + +0.3
3,578,174 - -0.2
3,578,258 - +0.1
3,578,322 + -0.1
3,578,327 - +0.1
3,578,327 - +0.0
3,578,336 + -0.7
3,578,336 + +0.3
3,578,336 + -0.2
3,578,337 - -0.3
3,578,340 - -2.1
3,578,362 + +0.7
3,578,388 + +1.2
3,578,388 + -0.0
3,578,388 + +0.2
3,578,389 - +0.6
3,578,389 - +0.3
3,578,389 - -0.1
3,578,389 - +0.3
3,578,389 - -0.1
3,578,603 - rdgC LU632_RS18955 0.26 -0.6
3,578,654 - rdgC LU632_RS18955 0.32 -0.8
3,578,765 - rdgC LU632_RS18955 0.44 -1.6
3,578,914 + rdgC LU632_RS18955 0.60 +0.3
3,578,915 - rdgC LU632_RS18955 0.61 -1.2
3,578,934 + rdgC LU632_RS18955 0.63 +1.0

Or see this region's nucleotide sequence