Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cydD and trxB are separated by 141 nucleotides trxB and LU632_RS09735 are separated by 93 nucleotides LU632_RS09735 and lrp are separated by 117 nucleotides
LU632_RS09725: cydD - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 1,843,893 to 1,845,653
cydD
LU632_RS09730: trxB - thioredoxin-disulfide reductase, at 1,845,795 to 1,846,763
trxB
LU632_RS09735: LU632_RS09735 - hypothetical protein, at 1,846,857 to 1,847,174
_RS09735
LU632_RS09740: lrp - leucine-responsive transcriptional regulator Lrp, at 1,847,292 to 1,847,786
lrp
Position (kb) 1845
1846
1847 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1845.722 kb on - strand at 1845.722 kb on - strand at 1845.775 kb on + strand at 1845.788 kb on + strand at 1845.809 kb on + strand at 1845.851 kb on + strand at 1845.929 kb on + strand, within trxB at 1845.974 kb on + strand, within trxB at 1845.974 kb on + strand, within trxB at 1845.975 kb on - strand, within trxB at 1845.976 kb on + strand, within trxB at 1845.977 kb on - strand, within trxB at 1846.058 kb on + strand, within trxB at 1846.058 kb on + strand, within trxB at 1846.077 kb on - strand, within trxB at 1846.454 kb on - strand, within trxB at 1846.693 kb on + strand at 1846.696 kb on - strand at 1846.696 kb on - strand at 1846.900 kb on + strand, within LU632_RS09735 at 1846.954 kb on + strand, within LU632_RS09735 at 1846.955 kb on - strand, within LU632_RS09735 at 1846.986 kb on + strand, within LU632_RS09735 at 1846.986 kb on + strand, within LU632_RS09735 at 1846.999 kb on - strand, within LU632_RS09735 at 1847.006 kb on + strand, within LU632_RS09735 at 1847.054 kb on - strand, within LU632_RS09735 at 1847.085 kb on - strand, within LU632_RS09735 at 1847.087 kb on + strand, within LU632_RS09735 at 1847.087 kb on + strand, within LU632_RS09735 at 1847.088 kb on - strand, within LU632_RS09735 at 1847.090 kb on - strand, within LU632_RS09735 at 1847.119 kb on + strand, within LU632_RS09735 at 1847.122 kb on - strand, within LU632_RS09735 at 1847.303 kb on + strand at 1847.304 kb on - strand at 1847.463 kb on - strand, within lrp at 1847.475 kb on - strand, within lrp at 1847.497 kb on - strand, within lrp at 1847.519 kb on - strand, within lrp at 1847.519 kb on - strand, within lrp at 1847.726 kb on + strand, within lrp at 1847.727 kb on - strand, within lrp at 1847.727 kb on - strand, within lrp at 1847.730 kb on + strand, within lrp at 1847.730 kb on + strand, within lrp
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 1,845,722 - +0.7 1,845,722 - +0.4 1,845,775 + +0.1 1,845,788 + -0.4 1,845,809 + +0.1 1,845,851 + -1.6 1,845,929 + trxB LU632_RS09730 0.14 -0.5 1,845,974 + trxB LU632_RS09730 0.18 -0.5 1,845,974 + trxB LU632_RS09730 0.18 -1.5 1,845,975 - trxB LU632_RS09730 0.19 -1.9 1,845,976 + trxB LU632_RS09730 0.19 +0.5 1,845,977 - trxB LU632_RS09730 0.19 +0.5 1,846,058 + trxB LU632_RS09730 0.27 -2.5 1,846,058 + trxB LU632_RS09730 0.27 -1.1 1,846,077 - trxB LU632_RS09730 0.29 -1.5 1,846,454 - trxB LU632_RS09730 0.68 -2.6 1,846,693 + -1.3 1,846,696 - +1.5 1,846,696 - -4.1 1,846,900 + LU632_RS09735 0.14 +0.5 1,846,954 + LU632_RS09735 0.31 +0.2 1,846,955 - LU632_RS09735 0.31 +0.3 1,846,986 + LU632_RS09735 0.41 -0.5 1,846,986 + LU632_RS09735 0.41 +0.3 1,846,999 - LU632_RS09735 0.45 -0.8 1,847,006 + LU632_RS09735 0.47 -0.3 1,847,054 - LU632_RS09735 0.62 +0.9 1,847,085 - LU632_RS09735 0.72 +0.9 1,847,087 + LU632_RS09735 0.72 -0.4 1,847,087 + LU632_RS09735 0.72 -0.2 1,847,088 - LU632_RS09735 0.73 +1.4 1,847,090 - LU632_RS09735 0.73 -0.5 1,847,119 + LU632_RS09735 0.82 +0.2 1,847,122 - LU632_RS09735 0.83 -0.2 1,847,303 + -0.7 1,847,304 - +0.6 1,847,463 - lrp LU632_RS09740 0.35 +2.5 1,847,475 - lrp LU632_RS09740 0.37 +0.2 1,847,497 - lrp LU632_RS09740 0.41 +0.2 1,847,519 - lrp LU632_RS09740 0.46 +0.4 1,847,519 - lrp LU632_RS09740 0.46 +0.2 1,847,726 + lrp LU632_RS09740 0.88 +0.6 1,847,727 - lrp LU632_RS09740 0.88 -0.4 1,847,727 - lrp LU632_RS09740 0.88 +0.1 1,847,730 + lrp LU632_RS09740 0.88 -0.2 1,847,730 + lrp LU632_RS09740 0.88 -0.6
Or see this region's nucleotide sequence