Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfbA and rfbC are separated by 2 nucleotides rfbC and LU632_RS08870 are separated by 142 nucleotides LU632_RS08870 and LU632_RS08875 are separated by 29 nucleotides
LU632_RS08860: rfbA - glucose-1-phosphate thymidylyltransferase RfbA, at 1,673,189 to 1,674,070
rfbA
LU632_RS08865: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,674,073 to 1,674,618
rfbC
LU632_RS08870: LU632_RS08870 - glycosyltransferase family 2 protein, at 1,674,761 to 1,675,702
_RS08870
LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027
_RS08875
Position (kb) 1674
1675
1676 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1673.803 kb on + strand, within rfbA at 1673.807 kb on + strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.808 kb on - strand, within rfbA at 1673.899 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.916 kb on + strand, within rfbA at 1673.977 kb on + strand, within rfbA at 1674.222 kb on + strand, within rfbC at 1674.270 kb on + strand, within rfbC at 1674.317 kb on + strand, within rfbC at 1674.327 kb on + strand, within rfbC at 1674.387 kb on + strand, within rfbC at 1674.387 kb on + strand, within rfbC at 1674.431 kb on - strand, within rfbC at 1674.431 kb on - strand, within rfbC at 1674.463 kb on - strand, within rfbC at 1674.475 kb on + strand, within rfbC at 1674.476 kb on - strand, within rfbC at 1674.479 kb on - strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.498 kb on + strand, within rfbC at 1674.503 kb on + strand, within rfbC at 1674.619 kb on + strand at 1674.746 kb on + strand at 1674.781 kb on + strand at 1674.914 kb on - strand, within LU632_RS08870 at 1674.924 kb on - strand, within LU632_RS08870 at 1675.090 kb on - strand, within LU632_RS08870 at 1675.133 kb on - strand, within LU632_RS08870 at 1675.420 kb on + strand, within LU632_RS08870 at 1675.420 kb on - strand, within LU632_RS08870 at 1675.422 kb on + strand, within LU632_RS08870 at 1675.423 kb on - strand, within LU632_RS08870 at 1675.423 kb on - strand, within LU632_RS08870 at 1676.260 kb on - strand, within LU632_RS08875 at 1676.318 kb on - strand, within LU632_RS08875 at 1676.347 kb on - strand, within LU632_RS08875 at 1676.347 kb on - strand, within LU632_RS08875 at 1676.370 kb on + strand, within LU632_RS08875
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 1,673,803 + rfbA LU632_RS08860 0.70 -3.5 1,673,807 + rfbA LU632_RS08860 0.70 -1.6 1,673,808 - rfbA LU632_RS08860 0.70 -2.6 1,673,808 - rfbA LU632_RS08860 0.70 -3.5 1,673,808 - rfbA LU632_RS08860 0.70 -5.1 1,673,899 + rfbA LU632_RS08860 0.80 -2.7 1,673,916 + rfbA LU632_RS08860 0.82 -1.4 1,673,916 + rfbA LU632_RS08860 0.82 -4.6 1,673,916 + rfbA LU632_RS08860 0.82 -3.0 1,673,977 + rfbA LU632_RS08860 0.89 -3.0 1,674,222 + rfbC LU632_RS08865 0.27 -4.1 1,674,270 + rfbC LU632_RS08865 0.36 -2.7 1,674,317 + rfbC LU632_RS08865 0.45 -4.1 1,674,327 + rfbC LU632_RS08865 0.47 -1.0 1,674,387 + rfbC LU632_RS08865 0.58 -4.8 1,674,387 + rfbC LU632_RS08865 0.58 -1.0 1,674,431 - rfbC LU632_RS08865 0.66 -1.4 1,674,431 - rfbC LU632_RS08865 0.66 -4.6 1,674,463 - rfbC LU632_RS08865 0.71 -3.7 1,674,475 + rfbC LU632_RS08865 0.74 -3.6 1,674,476 - rfbC LU632_RS08865 0.74 -3.1 1,674,479 - rfbC LU632_RS08865 0.74 -3.5 1,674,498 + rfbC LU632_RS08865 0.78 -5.9 1,674,498 + rfbC LU632_RS08865 0.78 -2.4 1,674,498 + rfbC LU632_RS08865 0.78 -3.3 1,674,503 + rfbC LU632_RS08865 0.79 -2.2 1,674,619 + -0.7 1,674,746 + -0.2 1,674,781 + -4.4 1,674,914 - LU632_RS08870 0.16 -2.6 1,674,924 - LU632_RS08870 0.17 -3.7 1,675,090 - LU632_RS08870 0.35 -3.4 1,675,133 - LU632_RS08870 0.39 -4.1 1,675,420 + LU632_RS08870 0.70 -4.0 1,675,420 - LU632_RS08870 0.70 -4.3 1,675,422 + LU632_RS08870 0.70 -4.2 1,675,423 - LU632_RS08870 0.70 -2.7 1,675,423 - LU632_RS08870 0.70 -4.7 1,676,260 - LU632_RS08875 0.41 -3.0 1,676,318 - LU632_RS08875 0.45 -2.7 1,676,347 - LU632_RS08875 0.47 -2.2 1,676,347 - LU632_RS08875 0.47 -3.5 1,676,370 + LU632_RS08875 0.49 -2.6
Or see this region's nucleotide sequence