Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07800

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07785 and LU632_RS07790 are separated by 48 nucleotidesLU632_RS07790 and LU632_RS07795 are separated by 30 nucleotidesLU632_RS07795 and mnmC are separated by 49 nucleotidesmnmC and fabB are separated by 155 nucleotides LU632_RS07785: LU632_RS07785 - sulfite exporter TauE/SafE family protein, at 1,451,208 to 1,452,011 _RS07785 LU632_RS07790: LU632_RS07790 - elongation factor P hydroxylase, at 1,452,060 to 1,452,605 _RS07790 LU632_RS07795: LU632_RS07795 - YfcL family protein, at 1,452,636 to 1,452,917 _RS07795 LU632_RS07800: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 1,452,967 to 1,454,967 mnmC LU632_RS07805: fabB - beta-ketoacyl-ACP synthase I, at 1,455,123 to 1,456,346 fabB Position (kb) 1452 1453 1454 1455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1451.967 kb on + strandat 1451.967 kb on + strandat 1451.967 kb on + strandat 1451.968 kb on - strandat 1451.968 kb on - strandat 1451.968 kb on - strandat 1452.140 kb on - strand, within LU632_RS07790at 1452.202 kb on + strand, within LU632_RS07790at 1452.216 kb on + strand, within LU632_RS07790at 1452.216 kb on + strand, within LU632_RS07790at 1452.219 kb on + strand, within LU632_RS07790at 1452.220 kb on - strand, within LU632_RS07790at 1452.276 kb on - strand, within LU632_RS07790at 1452.276 kb on - strand, within LU632_RS07790at 1452.530 kb on + strand, within LU632_RS07790at 1452.530 kb on + strand, within LU632_RS07790at 1452.531 kb on - strand, within LU632_RS07790at 1452.550 kb on - strand, within LU632_RS07790at 1452.552 kb on + strandat 1452.553 kb on - strandat 1452.635 kb on + strandat 1452.635 kb on + strandat 1452.636 kb on - strandat 1452.636 kb on - strandat 1452.659 kb on + strandat 1452.660 kb on - strandat 1452.761 kb on - strand, within LU632_RS07795at 1452.885 kb on - strand, within LU632_RS07795at 1452.974 kb on - strandat 1453.018 kb on - strandat 1453.136 kb on - strandat 1453.136 kb on - strandat 1453.199 kb on + strand, within mnmCat 1453.288 kb on - strand, within mnmCat 1453.299 kb on + strand, within mnmCat 1453.300 kb on - strand, within mnmCat 1453.311 kb on + strand, within mnmCat 1453.339 kb on + strand, within mnmCat 1453.339 kb on + strand, within mnmCat 1453.406 kb on + strand, within mnmCat 1453.407 kb on - strand, within mnmCat 1453.419 kb on + strand, within mnmCat 1453.419 kb on + strand, within mnmCat 1453.420 kb on - strand, within mnmCat 1453.420 kb on - strand, within mnmCat 1453.420 kb on - strand, within mnmCat 1453.467 kb on - strand, within mnmCat 1453.467 kb on - strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.538 kb on + strand, within mnmCat 1453.539 kb on - strand, within mnmCat 1453.539 kb on - strand, within mnmCat 1453.539 kb on - strand, within mnmCat 1453.540 kb on + strand, within mnmCat 1453.540 kb on + strand, within mnmCat 1453.540 kb on + strand, within mnmCat 1453.540 kb on + strand, within mnmCat 1453.541 kb on - strand, within mnmCat 1453.541 kb on - strand, within mnmCat 1453.689 kb on + strand, within mnmCat 1453.689 kb on + strand, within mnmCat 1453.770 kb on - strand, within mnmCat 1453.770 kb on - strand, within mnmCat 1453.824 kb on + strand, within mnmCat 1453.959 kb on - strand, within mnmCat 1453.959 kb on - strand, within mnmCat 1454.091 kb on - strand, within mnmCat 1454.293 kb on - strand, within mnmCat 1454.337 kb on + strand, within mnmCat 1454.353 kb on - strand, within mnmCat 1454.485 kb on + strand, within mnmCat 1454.485 kb on + strand, within mnmCat 1454.486 kb on - strand, within mnmCat 1454.486 kb on - strand, within mnmCat 1454.486 kb on - strand, within mnmCat 1454.496 kb on + strand, within mnmCat 1454.497 kb on - strand, within mnmCat 1455.004 kb on - strandat 1455.038 kb on + strandat 1455.039 kb on - strandat 1455.101 kb on + strandat 1455.101 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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1,451,967 + +0.5
1,451,967 + -0.5
1,451,967 + -0.2
1,451,968 - +0.0
1,451,968 - -0.6
1,451,968 - -0.3
1,452,140 - LU632_RS07790 0.15 +1.0
1,452,202 + LU632_RS07790 0.26 -0.8
1,452,216 + LU632_RS07790 0.29 +0.1
1,452,216 + LU632_RS07790 0.29 -0.5
1,452,219 + LU632_RS07790 0.29 -0.3
1,452,220 - LU632_RS07790 0.29 +0.4
1,452,276 - LU632_RS07790 0.40 -0.3
1,452,276 - LU632_RS07790 0.40 +0.4
1,452,530 + LU632_RS07790 0.86 -1.1
1,452,530 + LU632_RS07790 0.86 +0.5
1,452,531 - LU632_RS07790 0.86 +0.0
1,452,550 - LU632_RS07790 0.90 +0.2
1,452,552 + -1.0
1,452,553 - +0.6
1,452,635 + +0.2
1,452,635 + -0.6
1,452,636 - -1.7
1,452,636 - +0.2
1,452,659 + -0.6
1,452,660 - +0.2
1,452,761 - LU632_RS07795 0.44 -0.0
1,452,885 - LU632_RS07795 0.88 -2.0
1,452,974 - +0.0
1,453,018 - -0.6
1,453,136 - +0.4
1,453,136 - -0.2
1,453,199 + mnmC LU632_RS07800 0.12 +1.9
1,453,288 - mnmC LU632_RS07800 0.16 +0.1
1,453,299 + mnmC LU632_RS07800 0.17 -0.1
1,453,300 - mnmC LU632_RS07800 0.17 -0.3
1,453,311 + mnmC LU632_RS07800 0.17 -1.5
1,453,339 + mnmC LU632_RS07800 0.19 -0.5
1,453,339 + mnmC LU632_RS07800 0.19 -0.4
1,453,406 + mnmC LU632_RS07800 0.22 -0.6
1,453,407 - mnmC LU632_RS07800 0.22 -0.6
1,453,419 + mnmC LU632_RS07800 0.23 -0.2
1,453,419 + mnmC LU632_RS07800 0.23 -0.1
1,453,420 - mnmC LU632_RS07800 0.23 -0.0
1,453,420 - mnmC LU632_RS07800 0.23 -0.3
1,453,420 - mnmC LU632_RS07800 0.23 -0.2
1,453,467 - mnmC LU632_RS07800 0.25 -1.4
1,453,467 - mnmC LU632_RS07800 0.25 -0.1
1,453,538 + mnmC LU632_RS07800 0.29 +0.4
1,453,538 + mnmC LU632_RS07800 0.29 +0.1
1,453,538 + mnmC LU632_RS07800 0.29 +0.8
1,453,538 + mnmC LU632_RS07800 0.29 -0.6
1,453,538 + mnmC LU632_RS07800 0.29 -0.7
1,453,538 + mnmC LU632_RS07800 0.29 -0.5
1,453,539 - mnmC LU632_RS07800 0.29 +2.9
1,453,539 - mnmC LU632_RS07800 0.29 -0.2
1,453,539 - mnmC LU632_RS07800 0.29 +0.6
1,453,540 + mnmC LU632_RS07800 0.29 -1.0
1,453,540 + mnmC LU632_RS07800 0.29 -0.5
1,453,540 + mnmC LU632_RS07800 0.29 +0.3
1,453,540 + mnmC LU632_RS07800 0.29 -0.4
1,453,541 - mnmC LU632_RS07800 0.29 +0.2
1,453,541 - mnmC LU632_RS07800 0.29 +1.2
1,453,689 + mnmC LU632_RS07800 0.36 +0.1
1,453,689 + mnmC LU632_RS07800 0.36 -0.1
1,453,770 - mnmC LU632_RS07800 0.40 -0.8
1,453,770 - mnmC LU632_RS07800 0.40 -0.7
1,453,824 + mnmC LU632_RS07800 0.43 -0.4
1,453,959 - mnmC LU632_RS07800 0.50 -0.0
1,453,959 - mnmC LU632_RS07800 0.50 +0.8
1,454,091 - mnmC LU632_RS07800 0.56 -0.1
1,454,293 - mnmC LU632_RS07800 0.66 +0.5
1,454,337 + mnmC LU632_RS07800 0.68 -0.5
1,454,353 - mnmC LU632_RS07800 0.69 -0.3
1,454,485 + mnmC LU632_RS07800 0.76 -0.8
1,454,485 + mnmC LU632_RS07800 0.76 +0.3
1,454,486 - mnmC LU632_RS07800 0.76 +0.5
1,454,486 - mnmC LU632_RS07800 0.76 -0.1
1,454,486 - mnmC LU632_RS07800 0.76 -0.1
1,454,496 + mnmC LU632_RS07800 0.76 -1.4
1,454,497 - mnmC LU632_RS07800 0.76 +0.4
1,455,004 - +0.2
1,455,038 + -1.6
1,455,039 - -0.2
1,455,101 + -1.3
1,455,101 + -2.6

Or see this region's nucleotide sequence