Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt relA and LU632_RS06355 overlap by 20 nucleotides LU632_RS06355 and mazG are separated by 2 nucleotides mazG and pyrG are separated by 211 nucleotides
LU632_RS06350: relA - GTP diphosphokinase, at 1,219,570 to 1,221,798
relA
LU632_RS06355: LU632_RS06355 - hypothetical protein, at 1,221,779 to 1,221,997
_RS06355
LU632_RS06360: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,222,000 to 1,222,782
mazG
LU632_RS06365: pyrG - CTP synthase (glutamine hydrolyzing), at 1,222,994 to 1,224,631
pyrG
Position (kb) 1221
1222 Strain fitness (log2 ratio) -2
-1
0
1 at 1220.865 kb on + strand, within relA at 1220.928 kb on + strand, within relA at 1220.933 kb on - strand, within relA at 1220.940 kb on - strand, within relA at 1220.964 kb on + strand, within relA at 1221.136 kb on - strand, within relA at 1221.175 kb on + strand, within relA at 1221.465 kb on + strand, within relA at 1221.651 kb on - strand at 1221.702 kb on + strand at 1221.718 kb on + strand at 1221.718 kb on + strand at 1221.819 kb on + strand, within LU632_RS06355 at 1221.907 kb on - strand, within LU632_RS06355 at 1221.956 kb on + strand, within LU632_RS06355 at 1221.957 kb on - strand, within LU632_RS06355 at 1221.961 kb on + strand, within LU632_RS06355 at 1222.084 kb on + strand, within mazG at 1222.084 kb on + strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.085 kb on - strand, within mazG at 1222.187 kb on + strand, within mazG at 1222.188 kb on - strand, within mazG at 1222.204 kb on + strand, within mazG at 1222.213 kb on - strand, within mazG at 1222.236 kb on + strand, within mazG at 1222.255 kb on - strand, within mazG at 1222.293 kb on + strand, within mazG at 1222.294 kb on - strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.403 kb on + strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.404 kb on - strand, within mazG at 1222.410 kb on + strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.508 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.627 kb on - strand, within mazG at 1222.630 kb on - strand, within mazG at 1222.781 kb on - strand at 1222.781 kb on - strand at 1222.798 kb on - strand at 1222.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 1,220,865 + relA LU632_RS06350 0.58 +0.1 1,220,928 + relA LU632_RS06350 0.61 +0.7 1,220,933 - relA LU632_RS06350 0.61 +1.0 1,220,940 - relA LU632_RS06350 0.61 +0.1 1,220,964 + relA LU632_RS06350 0.63 -0.8 1,221,136 - relA LU632_RS06350 0.70 +0.3 1,221,175 + relA LU632_RS06350 0.72 -1.0 1,221,465 + relA LU632_RS06350 0.85 +0.9 1,221,651 - -0.1 1,221,702 + +0.8 1,221,718 + +0.1 1,221,718 + +1.7 1,221,819 + LU632_RS06355 0.18 -0.0 1,221,907 - LU632_RS06355 0.58 -0.6 1,221,956 + LU632_RS06355 0.81 -0.4 1,221,957 - LU632_RS06355 0.81 -0.0 1,221,961 + LU632_RS06355 0.83 +0.1 1,222,084 + mazG LU632_RS06360 0.11 -0.3 1,222,084 + mazG LU632_RS06360 0.11 +0.1 1,222,085 - mazG LU632_RS06360 0.11 +0.2 1,222,085 - mazG LU632_RS06360 0.11 +0.9 1,222,187 + mazG LU632_RS06360 0.24 -0.0 1,222,188 - mazG LU632_RS06360 0.24 -0.6 1,222,204 + mazG LU632_RS06360 0.26 -0.6 1,222,213 - mazG LU632_RS06360 0.27 -0.0 1,222,236 + mazG LU632_RS06360 0.30 +0.7 1,222,255 - mazG LU632_RS06360 0.33 -0.4 1,222,293 + mazG LU632_RS06360 0.37 +0.9 1,222,294 - mazG LU632_RS06360 0.38 -0.5 1,222,403 + mazG LU632_RS06360 0.51 -0.3 1,222,403 + mazG LU632_RS06360 0.51 +0.5 1,222,404 - mazG LU632_RS06360 0.52 -0.4 1,222,404 - mazG LU632_RS06360 0.52 +0.9 1,222,410 + mazG LU632_RS06360 0.52 -0.2 1,222,508 - mazG LU632_RS06360 0.65 -0.6 1,222,508 - mazG LU632_RS06360 0.65 -0.1 1,222,627 - mazG LU632_RS06360 0.80 -2.3 1,222,627 - mazG LU632_RS06360 0.80 +1.0 1,222,630 - mazG LU632_RS06360 0.80 +1.1 1,222,781 - +0.6 1,222,781 - -0.9 1,222,798 - +0.9 1,222,936 + +1.1
Or see this region's nucleotide sequence