Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05205

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05195 and LU632_RS05200 are separated by 68 nucleotidesLU632_RS05200 and LU632_RS05205 are separated by 6 nucleotidesLU632_RS05205 and LU632_RS05210 are separated by 192 nucleotidesLU632_RS05210 and LU632_RS05215 overlap by 1 nucleotides LU632_RS05195: LU632_RS05195 - hypothetical protein, at 1,006,560 to 1,006,877 _RS05195 LU632_RS05200: LU632_RS05200 - toll/interleukin-1 receptor domain-containing protein, at 1,006,946 to 1,007,578 _RS05200 LU632_RS05205: LU632_RS05205 - hypothetical protein, at 1,007,585 to 1,007,893 _RS05205 LU632_RS05210: LU632_RS05210 - TIGR03757 family integrating conjugative element protein, at 1,008,086 to 1,008,484 _RS05210 LU632_RS05215: LU632_RS05215 - TIGR03756 family integrating conjugative element protein, at 1,008,484 to 1,009,462 _RS05215 Position (kb) 1007 1008Strain fitness (log2 ratio) -2 -1 0 1 2at 1006.598 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.667 kb on + strand, within LU632_RS05195at 1006.668 kb on - strand, within LU632_RS05195at 1006.668 kb on - strand, within LU632_RS05195at 1006.673 kb on + strand, within LU632_RS05195at 1006.697 kb on - strand, within LU632_RS05195at 1006.763 kb on + strand, within LU632_RS05195at 1006.764 kb on - strand, within LU632_RS05195at 1006.822 kb on - strand, within LU632_RS05195at 1006.928 kb on - strandat 1007.061 kb on + strand, within LU632_RS05200at 1007.092 kb on + strand, within LU632_RS05200at 1007.152 kb on + strand, within LU632_RS05200at 1007.169 kb on - strand, within LU632_RS05200at 1007.171 kb on - strand, within LU632_RS05200at 1007.172 kb on + strand, within LU632_RS05200at 1007.217 kb on + strand, within LU632_RS05200at 1007.284 kb on + strand, within LU632_RS05200at 1007.328 kb on + strand, within LU632_RS05200at 1007.338 kb on - strand, within LU632_RS05200at 1007.370 kb on + strand, within LU632_RS05200at 1007.405 kb on - strand, within LU632_RS05200at 1007.408 kb on + strand, within LU632_RS05200at 1007.409 kb on - strand, within LU632_RS05200at 1007.478 kb on + strand, within LU632_RS05200at 1007.478 kb on + strand, within LU632_RS05200at 1007.483 kb on - strand, within LU632_RS05200at 1007.484 kb on + strand, within LU632_RS05200at 1007.492 kb on + strand, within LU632_RS05200at 1007.583 kb on - strandat 1007.642 kb on + strand, within LU632_RS05205at 1007.643 kb on - strand, within LU632_RS05205at 1007.643 kb on - strand, within LU632_RS05205at 1007.687 kb on + strand, within LU632_RS05205at 1007.830 kb on - strand, within LU632_RS05205at 1007.895 kb on - strandat 1007.965 kb on + strandat 1007.965 kb on + strandat 1007.965 kb on + strandat 1008.348 kb on - strand, within LU632_RS05210at 1008.425 kb on + strand, within LU632_RS05210at 1008.539 kb on + strandat 1008.540 kb on - strandat 1008.543 kb on - strandat 1008.543 kb on - strandat 1008.546 kb on + strandat 1008.546 kb on + strandat 1008.594 kb on + strand, within LU632_RS05215at 1008.736 kb on + strand, within LU632_RS05215at 1008.737 kb on - strand, within LU632_RS05215at 1008.737 kb on - strand, within LU632_RS05215

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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1,006,598 + LU632_RS05195 0.12 -1.1
1,006,667 + LU632_RS05195 0.34 +0.5
1,006,667 + LU632_RS05195 0.34 +2.0
1,006,667 + LU632_RS05195 0.34 -0.6
1,006,668 - LU632_RS05195 0.34 +1.3
1,006,668 - LU632_RS05195 0.34 +0.1
1,006,673 + LU632_RS05195 0.36 +0.7
1,006,697 - LU632_RS05195 0.43 -0.9
1,006,763 + LU632_RS05195 0.64 -0.4
1,006,764 - LU632_RS05195 0.64 -0.8
1,006,822 - LU632_RS05195 0.82 -0.3
1,006,928 - +1.1
1,007,061 + LU632_RS05200 0.18 -0.4
1,007,092 + LU632_RS05200 0.23 +0.1
1,007,152 + LU632_RS05200 0.33 -0.1
1,007,169 - LU632_RS05200 0.35 -2.0
1,007,171 - LU632_RS05200 0.36 -0.4
1,007,172 + LU632_RS05200 0.36 +0.3
1,007,217 + LU632_RS05200 0.43 -0.0
1,007,284 + LU632_RS05200 0.53 +0.5
1,007,328 + LU632_RS05200 0.60 -0.1
1,007,338 - LU632_RS05200 0.62 -2.3
1,007,370 + LU632_RS05200 0.67 +0.8
1,007,405 - LU632_RS05200 0.73 -0.7
1,007,408 + LU632_RS05200 0.73 +1.3
1,007,409 - LU632_RS05200 0.73 +0.4
1,007,478 + LU632_RS05200 0.84 +0.0
1,007,478 + LU632_RS05200 0.84 -0.0
1,007,483 - LU632_RS05200 0.85 +1.3
1,007,484 + LU632_RS05200 0.85 +0.5
1,007,492 + LU632_RS05200 0.86 +0.2
1,007,583 - -0.1
1,007,642 + LU632_RS05205 0.18 -0.3
1,007,643 - LU632_RS05205 0.19 +0.7
1,007,643 - LU632_RS05205 0.19 +0.1
1,007,687 + LU632_RS05205 0.33 +0.1
1,007,830 - LU632_RS05205 0.79 +0.7
1,007,895 - +0.2
1,007,965 + -0.6
1,007,965 + -1.1
1,007,965 + +0.3
1,008,348 - LU632_RS05210 0.66 +0.0
1,008,425 + LU632_RS05210 0.85 +0.5
1,008,539 + -0.9
1,008,540 - +0.2
1,008,543 - +0.4
1,008,543 - +0.7
1,008,546 + -0.7
1,008,546 + -0.0
1,008,594 + LU632_RS05215 0.11 +0.3
1,008,736 + LU632_RS05215 0.26 -0.3
1,008,737 - LU632_RS05215 0.26 -0.2
1,008,737 - LU632_RS05215 0.26 +0.8

Or see this region's nucleotide sequence