Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04915 and LU632_RS04920 are separated by 194 nucleotides LU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides
LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621
_RS04915
LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412
_RS04920
LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131
_RS04925
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
Position (kb) 959
960
961 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.793 kb on - strand at 959.793 kb on - strand at 959.836 kb on + strand at 959.837 kb on - strand at 959.979 kb on - strand, within LU632_RS04920 at 960.005 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.076 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.083 kb on - strand, within LU632_RS04920 at 960.128 kb on - strand, within LU632_RS04920 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.524 kb on + strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.594 kb on + strand, within LU632_RS04925 at 961.020 kb on - strand, within LU632_RS04925 at 961.119 kb on + strand at 961.137 kb on + strand at 961.203 kb on + strand at 961.204 kb on - strand at 961.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 959,793 - -0.6 959,793 - -0.0 959,836 + +1.3 959,837 - +0.3 959,979 - LU632_RS04920 0.27 +0.2 960,005 + LU632_RS04920 0.32 +0.1 960,070 + LU632_RS04920 0.43 -0.9 960,070 + LU632_RS04920 0.43 +0.7 960,070 + LU632_RS04920 0.43 -0.7 960,076 + LU632_RS04920 0.44 -1.0 960,078 + LU632_RS04920 0.44 +0.1 960,078 + LU632_RS04920 0.44 -0.5 960,078 + LU632_RS04920 0.44 -0.0 960,078 + LU632_RS04920 0.44 +3.1 960,078 + LU632_RS04920 0.44 -1.1 960,078 + LU632_RS04920 0.44 +0.6 960,078 + LU632_RS04920 0.44 +0.2 960,078 + LU632_RS04920 0.44 -0.7 960,078 + LU632_RS04920 0.44 -1.8 960,078 + LU632_RS04920 0.44 +0.8 960,078 + LU632_RS04920 0.44 +0.3 960,078 + LU632_RS04920 0.44 -0.5 960,079 - LU632_RS04920 0.44 -2.1 960,079 - LU632_RS04920 0.44 -0.0 960,079 - LU632_RS04920 0.44 -0.6 960,079 - LU632_RS04920 0.44 +0.5 960,079 - LU632_RS04920 0.44 -0.2 960,079 - LU632_RS04920 0.44 -1.5 960,079 - LU632_RS04920 0.44 +0.1 960,079 - LU632_RS04920 0.44 +0.3 960,083 - LU632_RS04920 0.45 +0.5 960,128 - LU632_RS04920 0.52 -0.6 960,492 + LU632_RS04925 0.11 +0.1 960,492 + LU632_RS04925 0.11 +0.4 960,492 + LU632_RS04925 0.11 +0.7 960,524 + LU632_RS04925 0.16 +0.7 960,525 - LU632_RS04925 0.16 +0.2 960,525 - LU632_RS04925 0.16 +0.4 960,529 + LU632_RS04925 0.17 -0.4 960,529 + LU632_RS04925 0.17 +0.7 960,530 - LU632_RS04925 0.17 -0.9 960,530 - LU632_RS04925 0.17 +0.3 960,591 + LU632_RS04925 0.25 +0.3 960,591 + LU632_RS04925 0.25 -0.6 960,591 + LU632_RS04925 0.25 -0.3 960,594 + LU632_RS04925 0.26 +0.2 961,020 - LU632_RS04925 0.85 -0.2 961,119 + +0.8 961,137 + +0.1 961,203 + -0.9 961,204 - -0.3 961,204 - -0.1
Or see this region's nucleotide sequence