Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04735 and LU632_RS04740 are separated by 69 nucleotides LU632_RS04740 and LU632_RS04745 are separated by 52 nucleotides LU632_RS04745 and LU632_RS04750 are separated by 407 nucleotides
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570
_RS04740
LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792
_RS04745
LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996
_RS04750
Position (kb) 932
933
934 Strain fitness (log2 ratio) -2
-1
0
1
2 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.707 kb on + strand, within LU632_RS04735 at 931.708 kb on - strand, within LU632_RS04735 at 931.716 kb on - strand, within LU632_RS04735 at 931.743 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.848 kb on - strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.907 kb on - strand, within LU632_RS04735 at 931.995 kb on - strand at 932.312 kb on + strand, within LU632_RS04740 at 932.313 kb on - strand, within LU632_RS04740 at 932.555 kb on - strand at 932.578 kb on - strand at 932.578 kb on - strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.863 kb on + strand at 933.866 kb on + strand at 933.875 kb on + strand at 933.883 kb on - strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on - strand at 933.887 kb on - strand at 933.916 kb on - strand at 933.965 kb on + strand at 933.993 kb on + strand at 933.994 kb on - strand at 933.997 kb on - strand at 934.067 kb on + strand at 934.068 kb on - strand at 934.070 kb on + strand at 934.286 kb on + strand, within LU632_RS04750 at 934.287 kb on - strand, within LU632_RS04750 at 934.342 kb on - strand, within LU632_RS04750 at 934.350 kb on + strand, within LU632_RS04750 at 934.350 kb on + strand, within LU632_RS04750 at 934.478 kb on + strand, within LU632_RS04750 at 934.479 kb on - strand, within LU632_RS04750 at 934.502 kb on - strand, within LU632_RS04750 at 934.583 kb on + strand, within LU632_RS04750 at 934.649 kb on + strand, within LU632_RS04750 at 934.650 kb on - strand, within LU632_RS04750
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 931,704 - LU632_RS04735 0.76 -0.3 931,704 - LU632_RS04735 0.76 +0.2 931,704 - LU632_RS04735 0.76 -1.2 931,707 + LU632_RS04735 0.76 +0.7 931,708 - LU632_RS04735 0.76 -0.3 931,716 - LU632_RS04735 0.76 +0.3 931,743 + LU632_RS04735 0.78 +0.6 931,775 + LU632_RS04735 0.79 +0.9 931,775 + LU632_RS04735 0.79 -0.3 931,821 + LU632_RS04735 0.82 +1.3 931,821 + LU632_RS04735 0.82 +0.1 931,821 + LU632_RS04735 0.82 -0.3 931,821 + LU632_RS04735 0.82 +2.3 931,821 + LU632_RS04735 0.82 -0.1 931,821 + LU632_RS04735 0.82 -0.2 931,822 - LU632_RS04735 0.82 +1.8 931,822 - LU632_RS04735 0.82 +0.1 931,848 - LU632_RS04735 0.83 -0.6 931,906 + LU632_RS04735 0.86 +0.7 931,906 + LU632_RS04735 0.86 +1.6 931,906 + LU632_RS04735 0.86 +1.2 931,907 - LU632_RS04735 0.86 +0.7 931,995 - -0.6 932,312 + LU632_RS04740 0.15 -0.7 932,313 - LU632_RS04740 0.15 -0.3 932,555 - +0.5 932,578 - -0.0 932,578 - -0.2 933,852 + -0.3 933,852 + +0.4 933,852 + +2.3 933,852 + +0.4 933,863 + +0.3 933,866 + -0.5 933,875 + -0.3 933,883 - +0.2 933,886 + -0.5 933,886 + -0.1 933,886 + -0.4 933,886 + -0.6 933,886 - +0.2 933,887 - -0.2 933,916 - +0.4 933,965 + -0.2 933,993 + -0.8 933,994 - -0.8 933,997 - -0.4 934,067 + +0.4 934,068 - -0.3 934,070 + -0.7 934,286 + LU632_RS04750 0.11 +0.9 934,287 - LU632_RS04750 0.11 -0.3 934,342 - LU632_RS04750 0.18 +0.6 934,350 + LU632_RS04750 0.19 -0.6 934,350 + LU632_RS04750 0.19 -0.5 934,478 + LU632_RS04750 0.35 -0.4 934,479 - LU632_RS04750 0.35 -2.7 934,502 - LU632_RS04750 0.38 -0.5 934,583 + LU632_RS04750 0.48 -0.3 934,649 + LU632_RS04750 0.56 -0.3 934,650 - LU632_RS04750 0.56 +0.3
Or see this region's nucleotide sequence