Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04700 and LU632_RS04705 are separated by 256 nucleotides LU632_RS04705 and LU632_RS04710 are separated by 416 nucleotides
LU632_RS04700: LU632_RS04700 - HlyD family secretion protein, at 920,635 to 921,663
_RS04700
LU632_RS04705: LU632_RS04705 - helix-turn-helix domain-containing protein, at 921,920 to 922,945
_RS04705
LU632_RS04710: LU632_RS04710 - IS110 family transposase, at 923,362 to 924,359
_RS04710
Position (kb) 921
922
923 Strain fitness (log2 ratio) -1
0
1
2 at 920.925 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 920.974 kb on - strand, within LU632_RS04700 at 921.022 kb on + strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.023 kb on - strand, within LU632_RS04700 at 921.105 kb on + strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.109 kb on - strand, within LU632_RS04700 at 921.195 kb on - strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.213 kb on + strand, within LU632_RS04700 at 921.263 kb on - strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.376 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.380 kb on + strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.381 kb on - strand, within LU632_RS04700 at 921.666 kb on - strand at 921.670 kb on + strand at 921.671 kb on - strand at 921.745 kb on + strand at 921.806 kb on + strand at 921.807 kb on - strand at 921.819 kb on - strand at 921.891 kb on - strand at 922.322 kb on + strand, within LU632_RS04705 at 922.360 kb on - strand, within LU632_RS04705 at 923.083 kb on + strand at 923.084 kb on - strand at 923.085 kb on + strand at 923.086 kb on - strand at 923.087 kb on + strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.088 kb on - strand at 923.117 kb on - strand at 923.907 kb on - strand, within LU632_RS04710
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 920,925 - LU632_RS04700 0.28 -0.1 920,974 - LU632_RS04700 0.33 +1.2 920,974 - LU632_RS04700 0.33 -0.7 921,022 + LU632_RS04700 0.38 -0.2 921,023 - LU632_RS04700 0.38 -0.4 921,023 - LU632_RS04700 0.38 +0.7 921,105 + LU632_RS04700 0.46 -0.2 921,109 - LU632_RS04700 0.46 -0.7 921,109 - LU632_RS04700 0.46 +2.1 921,195 - LU632_RS04700 0.54 +0.5 921,213 + LU632_RS04700 0.56 +0.6 921,213 + LU632_RS04700 0.56 +2.7 921,213 + LU632_RS04700 0.56 +0.3 921,263 - LU632_RS04700 0.61 +0.5 921,376 + LU632_RS04700 0.72 -0.0 921,376 + LU632_RS04700 0.72 -0.2 921,376 + LU632_RS04700 0.72 -0.1 921,380 + LU632_RS04700 0.72 +0.2 921,380 + LU632_RS04700 0.72 +1.6 921,381 - LU632_RS04700 0.72 -0.3 921,381 - LU632_RS04700 0.72 +1.1 921,666 - +0.4 921,670 + -0.0 921,671 - -0.1 921,745 + +0.7 921,806 + +0.6 921,807 - -0.4 921,819 - +1.7 921,891 - +0.7 922,322 + LU632_RS04705 0.39 +0.3 922,360 - LU632_RS04705 0.43 +0.3 923,083 + -0.0 923,084 - -0.7 923,085 + -0.1 923,086 - -0.9 923,087 + +0.0 923,088 - +0.1 923,088 - +0.3 923,088 - +0.4 923,088 - +0.7 923,088 - -0.3 923,117 - +1.0 923,907 - LU632_RS04710 0.55 -0.1
Or see this region's nucleotide sequence