Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04385 and LU632_RS04390 overlap by 7 nucleotides LU632_RS04390 and LU632_RS04395 are separated by 27 nucleotides LU632_RS04395 and LU632_RS04400 are separated by 27 nucleotides LU632_RS04400 and LU632_RS04405 are separated by 150 nucleotides
LU632_RS04385: LU632_RS04385 - hypothetical protein, at 867,174 to 867,617
_RS04385
LU632_RS04390: LU632_RS04390 - N-acetylmuramoyl-L-alanine amidase, at 867,611 to 868,225
_RS04390
LU632_RS04395: LU632_RS04395 - type VI secretion system tube protein Hcp, at 868,253 to 868,735
_RS04395
LU632_RS04400: LU632_RS04400 - recombinase family protein, at 868,763 to 869,344
_RS04400
LU632_RS04405: LU632_RS04405 - DUF4158 domain-containing protein, at 869,495 to 869,767
_RS04405
Position (kb) 868
869 Strain fitness (log2 ratio) -1
0
1 at 867.253 kb on - strand, within LU632_RS04385 at 867.318 kb on - strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.423 kb on + strand, within LU632_RS04385 at 867.424 kb on - strand, within LU632_RS04385 at 867.762 kb on - strand, within LU632_RS04390 at 868.139 kb on - strand, within LU632_RS04390 at 868.229 kb on + strand at 868.391 kb on - strand, within LU632_RS04395 at 868.391 kb on - strand, within LU632_RS04395 at 868.501 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.554 kb on + strand, within LU632_RS04395 at 868.555 kb on - strand, within LU632_RS04395 at 868.973 kb on - strand, within LU632_RS04400 at 868.973 kb on - strand, within LU632_RS04400 at 869.006 kb on + strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.007 kb on - strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.046 kb on + strand, within LU632_RS04400 at 869.159 kb on - strand, within LU632_RS04400 at 869.345 kb on - strand at 869.439 kb on + strand at 869.476 kb on + strand at 869.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 867,253 - LU632_RS04385 0.18 +0.9 867,318 - LU632_RS04385 0.32 +0.2 867,423 + LU632_RS04385 0.56 -0.6 867,423 + LU632_RS04385 0.56 +0.2 867,424 - LU632_RS04385 0.56 -0.3 867,762 - LU632_RS04390 0.25 -1.0 868,139 - LU632_RS04390 0.86 -0.3 868,229 + +0.4 868,391 - LU632_RS04395 0.29 +0.3 868,391 - LU632_RS04395 0.29 -0.1 868,501 + LU632_RS04395 0.51 +0.3 868,554 + LU632_RS04395 0.62 +0.3 868,554 + LU632_RS04395 0.62 -0.0 868,555 - LU632_RS04395 0.63 -0.6 868,973 - LU632_RS04400 0.36 +0.4 868,973 - LU632_RS04400 0.36 +0.5 869,006 + LU632_RS04400 0.42 -0.8 869,007 - LU632_RS04400 0.42 +0.9 869,007 - LU632_RS04400 0.42 +0.3 869,046 + LU632_RS04400 0.49 -1.4 869,046 + LU632_RS04400 0.49 +0.7 869,159 - LU632_RS04400 0.68 +1.7 869,345 - -1.1 869,439 + -0.0 869,476 + +0.3 869,515 + +0.5
Or see this region's nucleotide sequence