Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04340 and LU632_RS04345 are separated by 47 nucleotides LU632_RS04345 and LU632_RS04350 are separated by 243 nucleotides LU632_RS04350 and LU632_RS04355 are separated by 446 nucleotides LU632_RS04355 and LU632_RS04360 overlap by 11 nucleotides
LU632_RS04340: LU632_RS04340 - universal stress protein, at 861,168 to 861,269
_RS04340
LU632_RS04345: LU632_RS04345 - hypothetical protein, at 861,317 to 861,745
_RS04345
LU632_RS04350: LU632_RS04350 - hypothetical protein, at 861,989 to 862,129
_RS04350
LU632_RS04355: LU632_RS04355 - IS6 family transposase, at 862,576 to 862,905
_RS04355
LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426
_RS04360
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1 at 861.018 kb on - strand at 861.043 kb on - strand at 861.122 kb on - strand at 861.378 kb on - strand, within LU632_RS04345 at 861.382 kb on - strand, within LU632_RS04345 at 861.543 kb on + strand, within LU632_RS04345 at 861.586 kb on + strand, within LU632_RS04345 at 861.599 kb on + strand, within LU632_RS04345 at 861.601 kb on + strand, within LU632_RS04345 at 861.602 kb on - strand, within LU632_RS04345 at 861.602 kb on - strand, within LU632_RS04345 at 861.611 kb on - strand, within LU632_RS04345 at 861.645 kb on + strand, within LU632_RS04345 at 861.645 kb on + strand, within LU632_RS04345 at 861.690 kb on - strand, within LU632_RS04345 at 861.716 kb on + strand at 861.717 kb on - strand at 861.718 kb on + strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.719 kb on - strand at 861.729 kb on + strand at 861.732 kb on + strand at 861.786 kb on - strand at 861.840 kb on + strand at 861.959 kb on + strand at 861.989 kb on - strand at 862.023 kb on + strand, within LU632_RS04350 at 862.023 kb on + strand, within LU632_RS04350 at 862.024 kb on - strand, within LU632_RS04350 at 862.492 kb on + strand at 862.492 kb on + strand at 862.546 kb on + strand at 862.627 kb on - strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.628 kb on + strand, within LU632_RS04355 at 862.629 kb on - strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.641 kb on + strand, within LU632_RS04355 at 862.657 kb on + strand, within LU632_RS04355 at 862.748 kb on + strand, within LU632_RS04355 at 862.816 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.843 kb on + strand, within LU632_RS04355 at 862.844 kb on - strand, within LU632_RS04355 at 863.060 kb on + strand, within LU632_RS04360 at 863.077 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360 at 863.098 kb on + strand, within LU632_RS04360
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 861,018 - -2.1 861,043 - -0.1 861,122 - -0.8 861,378 - LU632_RS04345 0.14 +0.3 861,382 - LU632_RS04345 0.15 -0.6 861,543 + LU632_RS04345 0.53 -0.9 861,586 + LU632_RS04345 0.63 -0.4 861,599 + LU632_RS04345 0.66 +0.7 861,601 + LU632_RS04345 0.66 +0.7 861,602 - LU632_RS04345 0.66 +0.3 861,602 - LU632_RS04345 0.66 +1.2 861,611 - LU632_RS04345 0.69 -0.2 861,645 + LU632_RS04345 0.76 -0.7 861,645 + LU632_RS04345 0.76 -0.6 861,690 - LU632_RS04345 0.87 +0.2 861,716 + +0.4 861,717 - -1.3 861,718 + -0.5 861,719 - -0.4 861,719 - -0.3 861,719 - -1.4 861,719 - +1.2 861,729 + -0.3 861,732 + +0.0 861,786 - -0.8 861,840 + -0.4 861,959 + -0.5 861,989 - +0.5 862,023 + LU632_RS04350 0.24 -1.3 862,023 + LU632_RS04350 0.24 -0.4 862,024 - LU632_RS04350 0.25 -1.8 862,492 + -0.1 862,492 + -0.4 862,546 + +0.3 862,627 - LU632_RS04355 0.15 +0.1 862,628 + LU632_RS04355 0.16 +0.7 862,628 + LU632_RS04355 0.16 +0.5 862,628 + LU632_RS04355 0.16 -0.3 862,629 - LU632_RS04355 0.16 +1.2 862,641 + LU632_RS04355 0.20 +0.0 862,641 + LU632_RS04355 0.20 -0.3 862,641 + LU632_RS04355 0.20 -0.3 862,657 + LU632_RS04355 0.25 -0.3 862,748 + LU632_RS04355 0.52 +1.2 862,816 + LU632_RS04355 0.73 +0.7 862,843 + LU632_RS04355 0.81 -0.0 862,843 + LU632_RS04355 0.81 -0.1 862,844 - LU632_RS04355 0.81 -0.3 863,060 + LU632_RS04360 0.31 +0.1 863,077 + LU632_RS04360 0.34 +0.6 863,098 + LU632_RS04360 0.38 -0.3 863,098 + LU632_RS04360 0.38 +0.0
Or see this region's nucleotide sequence