Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04105 and LU632_RS04110 are separated by 123 nucleotides LU632_RS04110 and LU632_RS04115 are separated by 37 nucleotides LU632_RS04115 and radC are separated by 11 nucleotides radC and LU632_RS04125 are separated by 12 nucleotides LU632_RS04125 and LU632_RS04130 are separated by 22 nucleotides
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
LU632_RS04110: LU632_RS04110 - DUF945 domain-containing protein, at 817,787 to 818,608
_RS04110
LU632_RS04115: LU632_RS04115 - antirestriction protein, at 818,646 to 819,125
_RS04115
LU632_RS04120: radC - DNA repair protein RadC, at 819,137 to 819,616
radC
LU632_RS04125: LU632_RS04125 - DUF987 domain-containing protein, at 819,629 to 819,850
_RS04125
LU632_RS04130: LU632_RS04130 - type IV toxin-antitoxin system YeeU family antitoxin, at 819,873 to 820,232
_RS04130
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 817.712 kb on + strand at 817.712 kb on + strand at 817.718 kb on + strand at 817.782 kb on + strand at 817.783 kb on - strand at 817.783 kb on - strand at 817.936 kb on + strand, within LU632_RS04110 at 817.936 kb on + strand, within LU632_RS04110 at 818.127 kb on + strand, within LU632_RS04110 at 818.128 kb on - strand, within LU632_RS04110 at 818.243 kb on + strand, within LU632_RS04110 at 818.244 kb on - strand, within LU632_RS04110 at 818.308 kb on - strand, within LU632_RS04110 at 818.506 kb on + strand, within LU632_RS04110 at 818.535 kb on + strand at 818.535 kb on + strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.536 kb on - strand at 818.585 kb on - strand at 818.585 kb on - strand at 818.602 kb on + strand at 818.625 kb on - strand at 818.716 kb on + strand, within LU632_RS04115 at 818.807 kb on + strand, within LU632_RS04115 at 818.921 kb on + strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.922 kb on - strand, within LU632_RS04115 at 818.926 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.007 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.057 kb on + strand, within LU632_RS04115 at 819.156 kb on + strand at 819.171 kb on + strand at 819.228 kb on + strand, within radC at 819.229 kb on - strand, within radC at 819.352 kb on + strand, within radC at 819.353 kb on - strand, within radC at 819.624 kb on + strand at 819.663 kb on + strand, within LU632_RS04125 at 819.664 kb on - strand, within LU632_RS04125 at 819.713 kb on + strand, within LU632_RS04125 at 819.818 kb on + strand, within LU632_RS04125 at 819.819 kb on - strand, within LU632_RS04125 at 819.819 kb on - strand, within LU632_RS04125 at 819.819 kb on - strand, within LU632_RS04125 at 819.819 kb on - strand, within LU632_RS04125 at 819.849 kb on - strand at 819.854 kb on - strand at 819.869 kb on + strand at 819.890 kb on + strand at 819.990 kb on + strand, within LU632_RS04130 at 819.991 kb on - strand, within LU632_RS04130 at 820.010 kb on + strand, within LU632_RS04130 at 820.010 kb on + strand, within LU632_RS04130 at 820.011 kb on - strand, within LU632_RS04130 at 820.011 kb on - strand, within LU632_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 817,712 + +0.8 817,712 + -0.2 817,718 + +0.0 817,782 + +1.4 817,783 - +0.1 817,783 - -0.2 817,936 + LU632_RS04110 0.18 -0.2 817,936 + LU632_RS04110 0.18 +0.7 818,127 + LU632_RS04110 0.41 -0.4 818,128 - LU632_RS04110 0.41 -0.1 818,243 + LU632_RS04110 0.55 +0.2 818,244 - LU632_RS04110 0.56 -1.2 818,308 - LU632_RS04110 0.63 +0.1 818,506 + LU632_RS04110 0.87 +0.3 818,535 + -0.3 818,535 + +0.1 818,536 - -1.2 818,536 - -1.8 818,536 - -0.2 818,536 - +0.3 818,585 - +0.9 818,585 - +0.5 818,602 + -0.4 818,625 - +0.2 818,716 + LU632_RS04115 0.15 -0.2 818,807 + LU632_RS04115 0.34 +0.2 818,921 + LU632_RS04115 0.57 -1.4 818,922 - LU632_RS04115 0.57 +0.6 818,922 - LU632_RS04115 0.57 +0.2 818,922 - LU632_RS04115 0.57 -0.2 818,926 + LU632_RS04115 0.58 -0.3 819,007 + LU632_RS04115 0.75 +0.1 819,007 + LU632_RS04115 0.75 +1.5 819,057 + LU632_RS04115 0.86 +1.0 819,057 + LU632_RS04115 0.86 +1.0 819,057 + LU632_RS04115 0.86 +0.8 819,156 + +0.8 819,171 + -0.2 819,228 + radC LU632_RS04120 0.19 -0.5 819,229 - radC LU632_RS04120 0.19 -0.2 819,352 + radC LU632_RS04120 0.45 +2.6 819,353 - radC LU632_RS04120 0.45 -0.2 819,624 + +0.4 819,663 + LU632_RS04125 0.15 -0.1 819,664 - LU632_RS04125 0.16 -0.2 819,713 + LU632_RS04125 0.38 -0.0 819,818 + LU632_RS04125 0.85 +0.8 819,819 - LU632_RS04125 0.86 -0.8 819,819 - LU632_RS04125 0.86 +0.8 819,819 - LU632_RS04125 0.86 -0.9 819,819 - LU632_RS04125 0.86 -0.1 819,849 - -1.2 819,854 - +0.8 819,869 + +0.2 819,890 + -0.2 819,990 + LU632_RS04130 0.33 +0.1 819,991 - LU632_RS04130 0.33 +0.5 820,010 + LU632_RS04130 0.38 -0.3 820,010 + LU632_RS04130 0.38 +0.8 820,011 - LU632_RS04130 0.38 +1.1 820,011 - LU632_RS04130 0.38 -0.5
Or see this region's nucleotide sequence