Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04080 and LU632_RS04085 are separated by 209 nucleotides LU632_RS04085 and LU632_RS04090 are separated by 221 nucleotides LU632_RS04090 and LU632_RS04095 are separated by 37 nucleotides LU632_RS04095 and LU632_RS04100 overlap by 82 nucleotides LU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides
LU632_RS04080: LU632_RS04080 - IS256 family transposase, at 813,174 to 814,308
_RS04080
LU632_RS04085: LU632_RS04085 - hypothetical protein, at 814,518 to 814,868
_RS04085
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400
_RS04095
LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594
_RS04100
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
Position (kb) 815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 814.383 kb on + strand at 814.477 kb on + strand at 814.519 kb on + strand at 814.606 kb on - strand, within LU632_RS04085 at 814.606 kb on - strand, within LU632_RS04085 at 814.696 kb on + strand, within LU632_RS04085 at 814.849 kb on - strand at 814.850 kb on + strand at 814.851 kb on - strand at 814.870 kb on + strand at 814.871 kb on - strand at 814.886 kb on - strand at 814.912 kb on + strand at 814.915 kb on + strand at 814.916 kb on - strand at 814.935 kb on + strand at 814.956 kb on + strand at 815.074 kb on + strand at 815.163 kb on + strand at 815.178 kb on + strand, within LU632_RS04090 at 815.178 kb on + strand, within LU632_RS04090 at 815.179 kb on - strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.182 kb on + strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.183 kb on - strand, within LU632_RS04090 at 815.233 kb on + strand, within LU632_RS04090 at 815.294 kb on - strand, within LU632_RS04090 at 815.332 kb on - strand, within LU632_RS04090 at 815.429 kb on - strand, within LU632_RS04090 at 815.491 kb on + strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.588 kb on - strand, within LU632_RS04090 at 815.690 kb on + strand, within LU632_RS04090 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 816.619 kb on + strand at 816.651 kb on + strand at 816.652 kb on - strand at 816.654 kb on + strand at 816.654 kb on + strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.756 kb on + strand at 816.779 kb on - strand at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 814,383 + +0.4 814,477 + +0.2 814,519 + -0.4 814,606 - LU632_RS04085 0.25 -1.0 814,606 - LU632_RS04085 0.25 -0.3 814,696 + LU632_RS04085 0.51 +0.6 814,849 - -3.0 814,850 + +0.3 814,851 - -1.1 814,870 + +0.1 814,871 - +0.3 814,886 - +0.5 814,912 + -0.4 814,915 + -0.2 814,916 - -0.5 814,935 + +0.8 814,956 + -0.5 815,074 + -1.3 815,163 + +1.4 815,178 + LU632_RS04090 0.11 +0.1 815,178 + LU632_RS04090 0.11 +0.2 815,179 - LU632_RS04090 0.12 +0.1 815,182 + LU632_RS04090 0.12 -0.4 815,182 + LU632_RS04090 0.12 +0.3 815,182 + LU632_RS04090 0.12 +1.1 815,183 - LU632_RS04090 0.12 +2.4 815,183 - LU632_RS04090 0.12 +0.2 815,233 + LU632_RS04090 0.19 +0.8 815,294 - LU632_RS04090 0.26 -0.2 815,332 - LU632_RS04090 0.31 -0.6 815,429 - LU632_RS04090 0.44 -0.0 815,491 + LU632_RS04090 0.52 -0.7 815,517 - LU632_RS04090 0.55 +0.6 815,517 - LU632_RS04090 0.55 -0.1 815,517 - LU632_RS04090 0.55 -0.0 815,580 + LU632_RS04090 0.64 +0.3 815,580 + LU632_RS04090 0.64 +0.4 815,580 + LU632_RS04090 0.64 +0.3 815,588 - LU632_RS04090 0.65 +0.0 815,690 + LU632_RS04090 0.78 +1.5 815,755 - LU632_RS04090 0.86 +0.2 815,828 + +0.3 815,828 + +0.0 815,829 - +0.8 815,829 - +0.4 815,829 - -0.6 815,829 - +0.5 816,619 + -0.6 816,651 + +0.1 816,652 - +0.6 816,654 + -0.1 816,654 + +0.0 816,655 - -0.3 816,655 - -0.0 816,655 - -0.4 816,756 + +0.8 816,779 - +0.1 816,856 + LU632_RS04105 0.14 -0.1 816,857 - LU632_RS04105 0.14 -0.5
Or see this region's nucleotide sequence