Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssG and LU632_RS03875 are separated by 46 nucleotides LU632_RS03875 and tssH are separated by 422 nucleotides
LU632_RS03870: tssG - type VI secretion system baseplate subunit TssG, at 771,713 to 772,766
tssG
LU632_RS03875: LU632_RS03875 - DUF4225 domain-containing protein, at 772,813 to 773,574
_RS03875
LU632_RS03880: tssH - type VI secretion system ATPase TssH, at 773,997 to 776,612
tssH
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1
2 at 771.985 kb on + strand, within tssG at 771.986 kb on - strand, within tssG at 772.066 kb on - strand, within tssG at 772.184 kb on + strand, within tssG at 772.184 kb on + strand, within tssG at 772.185 kb on - strand, within tssG at 772.185 kb on - strand, within tssG at 772.185 kb on - strand, within tssG at 772.344 kb on + strand, within tssG at 772.345 kb on - strand, within tssG at 772.345 kb on - strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.774 kb on - strand at 772.920 kb on + strand, within LU632_RS03875 at 772.931 kb on + strand, within LU632_RS03875 at 772.940 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 773.075 kb on + strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.145 kb on - strand, within LU632_RS03875 at 773.198 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.273 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.377 kb on - strand, within LU632_RS03875 at 773.399 kb on - strand, within LU632_RS03875 at 773.400 kb on - strand, within LU632_RS03875 at 773.401 kb on + strand, within LU632_RS03875 at 773.556 kb on - strand at 773.556 kb on - strand at 773.578 kb on - strand at 773.589 kb on - strand at 773.589 kb on - strand at 773.854 kb on - strand at 773.854 kb on - strand at 774.039 kb on - strand at 774.046 kb on + strand at 774.047 kb on - strand at 774.097 kb on + strand at 774.099 kb on + strand at 774.099 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.122 kb on - strand at 774.155 kb on - strand at 774.155 kb on - strand at 774.346 kb on + strand, within tssH at 774.547 kb on - strand, within tssH
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 771,985 + tssG LU632_RS03870 0.26 -1.7 771,986 - tssG LU632_RS03870 0.26 +0.6 772,066 - tssG LU632_RS03870 0.33 +0.3 772,184 + tssG LU632_RS03870 0.45 -0.0 772,184 + tssG LU632_RS03870 0.45 +0.6 772,185 - tssG LU632_RS03870 0.45 -0.8 772,185 - tssG LU632_RS03870 0.45 -0.1 772,185 - tssG LU632_RS03870 0.45 +0.4 772,344 + tssG LU632_RS03870 0.60 +1.2 772,345 - tssG LU632_RS03870 0.60 +0.6 772,345 - tssG LU632_RS03870 0.60 +0.1 772,621 + tssG LU632_RS03870 0.86 +0.5 772,621 + tssG LU632_RS03870 0.86 -1.4 772,621 + tssG LU632_RS03870 0.86 -0.3 772,621 + tssG LU632_RS03870 0.86 -0.5 772,621 + tssG LU632_RS03870 0.86 -0.6 772,621 + tssG LU632_RS03870 0.86 -0.1 772,621 + tssG LU632_RS03870 0.86 +0.4 772,621 + tssG LU632_RS03870 0.86 -0.0 772,622 - tssG LU632_RS03870 0.86 +1.8 772,622 - tssG LU632_RS03870 0.86 +0.5 772,622 - tssG LU632_RS03870 0.86 +0.4 772,622 - tssG LU632_RS03870 0.86 +0.0 772,622 - tssG LU632_RS03870 0.86 +1.5 772,622 - tssG LU632_RS03870 0.86 -0.7 772,622 - tssG LU632_RS03870 0.86 -0.4 772,622 - tssG LU632_RS03870 0.86 +0.7 772,774 - -0.8 772,920 + LU632_RS03875 0.14 -0.0 772,931 + LU632_RS03875 0.15 -1.7 772,940 + LU632_RS03875 0.17 +0.3 772,986 + LU632_RS03875 0.23 -0.1 772,986 + LU632_RS03875 0.23 +1.1 772,986 + LU632_RS03875 0.23 +0.5 772,986 + LU632_RS03875 0.23 -0.2 772,986 + LU632_RS03875 0.23 -0.8 772,986 + LU632_RS03875 0.23 -1.3 772,987 - LU632_RS03875 0.23 +0.7 772,987 - LU632_RS03875 0.23 -0.2 772,987 - LU632_RS03875 0.23 -0.2 772,987 - LU632_RS03875 0.23 -1.5 772,987 - LU632_RS03875 0.23 +0.1 772,987 - LU632_RS03875 0.23 +0.3 772,987 - LU632_RS03875 0.23 -0.2 773,075 + LU632_RS03875 0.34 +0.5 773,076 - LU632_RS03875 0.35 +0.0 773,076 - LU632_RS03875 0.35 +0.2 773,081 - LU632_RS03875 0.35 -1.3 773,081 - LU632_RS03875 0.35 -0.6 773,145 - LU632_RS03875 0.44 +0.3 773,198 + LU632_RS03875 0.51 -1.1 773,272 + LU632_RS03875 0.60 +0.0 773,272 + LU632_RS03875 0.60 +0.0 773,273 - LU632_RS03875 0.60 -1.7 773,367 - LU632_RS03875 0.73 -0.4 773,367 - LU632_RS03875 0.73 +0.5 773,377 - LU632_RS03875 0.74 +0.0 773,399 - LU632_RS03875 0.77 -0.2 773,400 - LU632_RS03875 0.77 +1.0 773,401 + LU632_RS03875 0.77 +1.4 773,556 - -0.2 773,556 - +0.3 773,578 - -0.1 773,589 - -1.1 773,589 - -0.1 773,854 - -0.4 773,854 - -0.7 774,039 - +0.2 774,046 + +0.8 774,047 - -0.7 774,097 + -0.4 774,099 + +0.8 774,099 + +0.3 774,121 + +0.8 774,121 + +0.2 774,121 + +0.4 774,122 - +0.2 774,155 - -0.4 774,155 - +0.1 774,346 + tssH LU632_RS03880 0.13 +0.8 774,547 - tssH LU632_RS03880 0.21 -0.6
Or see this region's nucleotide sequence