Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuC and leuB are separated by 2 nucleotides leuB and leuA are separated by 2 nucleotides
LU632_RS02870: leuC - 3-isopropylmalate dehydratase large subunit, at 583,140 to 584,549
leuC
LU632_RS02875: leuB - 3-isopropylmalate dehydrogenase, at 584,552 to 585,640
leuB
LU632_RS02880: leuA - 2-isopropylmalate synthase, at 585,643 to 587,211
leuA
Position (kb) 584
585
586 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 583.577 kb on + strand, within leuC at 583.577 kb on + strand, within leuC at 583.578 kb on - strand, within leuC at 583.579 kb on + strand, within leuC at 583.612 kb on - strand, within leuC at 583.643 kb on + strand, within leuC at 583.643 kb on + strand, within leuC at 583.644 kb on - strand, within leuC at 583.689 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.896 kb on + strand, within leuC at 583.897 kb on - strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 584.007 kb on - strand, within leuC at 584.042 kb on + strand, within leuC at 584.118 kb on - strand, within leuC at 584.162 kb on + strand, within leuC at 584.163 kb on - strand, within leuC at 584.242 kb on + strand, within leuC at 584.253 kb on - strand, within leuC at 584.283 kb on - strand, within leuC at 584.476 kb on + strand at 584.506 kb on + strand at 584.507 kb on - strand at 584.522 kb on + strand at 584.536 kb on + strand at 584.538 kb on + strand at 584.549 kb on + strand at 584.707 kb on + strand, within leuB at 584.720 kb on + strand, within leuB at 584.721 kb on - strand, within leuB at 584.965 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 585.119 kb on - strand, within leuB at 585.207 kb on + strand, within leuB at 585.208 kb on - strand, within leuB at 585.208 kb on - strand, within leuB at 585.460 kb on + strand, within leuB at 585.622 kb on + strand at 585.622 kb on + strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.628 kb on - strand at 585.649 kb on + strand at 585.650 kb on - strand at 585.761 kb on - strand at 585.761 kb on - strand at 585.763 kb on - strand at 585.803 kb on + strand, within leuA at 585.803 kb on + strand, within leuA at 585.804 kb on - strand, within leuA at 585.820 kb on + strand, within leuA at 585.867 kb on - strand, within leuA at 585.882 kb on + strand, within leuA at 586.001 kb on - strand, within leuA at 586.103 kb on - strand, within leuA at 586.142 kb on + strand, within leuA at 586.142 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.175 kb on + strand, within leuA at 586.191 kb on + strand, within leuA at 586.301 kb on - strand, within leuA at 586.371 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.463 kb on - strand, within leuA at 586.531 kb on - strand, within leuA at 586.592 kb on - strand, within leuA at 586.605 kb on + strand, within leuA
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 583,577 + leuC LU632_RS02870 0.31 -0.7 583,577 + leuC LU632_RS02870 0.31 -1.2 583,578 - leuC LU632_RS02870 0.31 -0.7 583,579 + leuC LU632_RS02870 0.31 -1.5 583,612 - leuC LU632_RS02870 0.33 -1.2 583,643 + leuC LU632_RS02870 0.36 +0.0 583,643 + leuC LU632_RS02870 0.36 -1.1 583,644 - leuC LU632_RS02870 0.36 -0.9 583,689 + leuC LU632_RS02870 0.39 +0.2 583,892 + leuC LU632_RS02870 0.53 -1.0 583,892 + leuC LU632_RS02870 0.53 -1.5 583,892 + leuC LU632_RS02870 0.53 -1.6 583,892 + leuC LU632_RS02870 0.53 -2.7 583,892 + leuC LU632_RS02870 0.53 -1.3 583,893 - leuC LU632_RS02870 0.53 -2.6 583,893 - leuC LU632_RS02870 0.53 -1.7 583,893 - leuC LU632_RS02870 0.53 -1.0 583,896 + leuC LU632_RS02870 0.54 -1.2 583,897 - leuC LU632_RS02870 0.54 -1.1 583,953 + leuC LU632_RS02870 0.58 -1.2 583,953 + leuC LU632_RS02870 0.58 -0.7 583,953 + leuC LU632_RS02870 0.58 -1.5 583,954 - leuC LU632_RS02870 0.58 -1.7 583,954 - leuC LU632_RS02870 0.58 -2.0 583,954 - leuC LU632_RS02870 0.58 +0.7 584,007 - leuC LU632_RS02870 0.61 -1.2 584,042 + leuC LU632_RS02870 0.64 +2.4 584,118 - leuC LU632_RS02870 0.69 -1.3 584,162 + leuC LU632_RS02870 0.72 -1.0 584,163 - leuC LU632_RS02870 0.73 +1.0 584,242 + leuC LU632_RS02870 0.78 -2.0 584,253 - leuC LU632_RS02870 0.79 -2.1 584,283 - leuC LU632_RS02870 0.81 -1.0 584,476 + -0.0 584,506 + -1.2 584,507 - -4.2 584,522 + -0.2 584,536 + -2.2 584,538 + +0.1 584,549 + -0.7 584,707 + leuB LU632_RS02875 0.14 -0.4 584,720 + leuB LU632_RS02875 0.15 -0.4 584,721 - leuB LU632_RS02875 0.16 -1.3 584,965 + leuB LU632_RS02875 0.38 -0.8 584,967 + leuB LU632_RS02875 0.38 -1.5 584,967 + leuB LU632_RS02875 0.38 -0.2 584,967 + leuB LU632_RS02875 0.38 +1.6 584,967 + leuB LU632_RS02875 0.38 -0.2 584,967 + leuB LU632_RS02875 0.38 -1.4 584,967 + leuB LU632_RS02875 0.38 -2.9 584,967 + leuB LU632_RS02875 0.38 -2.2 584,967 + leuB LU632_RS02875 0.38 -1.6 584,967 + leuB LU632_RS02875 0.38 -0.0 584,967 + leuB LU632_RS02875 0.38 -0.5 584,967 + leuB LU632_RS02875 0.38 -2.2 584,967 + leuB LU632_RS02875 0.38 -2.0 584,967 + leuB LU632_RS02875 0.38 -3.2 584,967 + leuB LU632_RS02875 0.38 -1.7 584,968 - leuB LU632_RS02875 0.38 -1.7 584,968 - leuB LU632_RS02875 0.38 -0.5 584,968 - leuB LU632_RS02875 0.38 -0.5 584,968 - leuB LU632_RS02875 0.38 -1.4 584,968 - leuB LU632_RS02875 0.38 -1.3 584,968 - leuB LU632_RS02875 0.38 -0.8 584,968 - leuB LU632_RS02875 0.38 -0.9 584,968 - leuB LU632_RS02875 0.38 -0.2 584,968 - leuB LU632_RS02875 0.38 -0.9 584,968 - leuB LU632_RS02875 0.38 -1.2 584,968 - leuB LU632_RS02875 0.38 +0.8 584,968 - leuB LU632_RS02875 0.38 -1.1 584,968 - leuB LU632_RS02875 0.38 -0.3 585,119 - leuB LU632_RS02875 0.52 -1.0 585,207 + leuB LU632_RS02875 0.60 -0.3 585,208 - leuB LU632_RS02875 0.60 -0.2 585,208 - leuB LU632_RS02875 0.60 +0.1 585,460 + leuB LU632_RS02875 0.83 -1.7 585,622 + -1.1 585,622 + -1.0 585,623 - -0.9 585,623 - -1.2 585,623 - -0.6 585,627 + -1.0 585,627 + -0.7 585,627 + -1.1 585,628 - -0.7 585,649 + -1.0 585,650 - +0.6 585,761 - -1.4 585,761 - -2.2 585,763 - -0.4 585,803 + leuA LU632_RS02880 0.10 -0.6 585,803 + leuA LU632_RS02880 0.10 -0.3 585,804 - leuA LU632_RS02880 0.10 +0.4 585,820 + leuA LU632_RS02880 0.11 -2.0 585,867 - leuA LU632_RS02880 0.14 +0.4 585,882 + leuA LU632_RS02880 0.15 -0.9 586,001 - leuA LU632_RS02880 0.23 +1.0 586,103 - leuA LU632_RS02880 0.29 -0.8 586,142 + leuA LU632_RS02880 0.32 -0.2 586,142 + leuA LU632_RS02880 0.32 -0.6 586,160 + leuA LU632_RS02880 0.33 -0.4 586,160 + leuA LU632_RS02880 0.33 -1.1 586,173 + leuA LU632_RS02880 0.34 -0.7 586,173 + leuA LU632_RS02880 0.34 -0.9 586,173 + leuA LU632_RS02880 0.34 -1.5 586,173 + leuA LU632_RS02880 0.34 -1.6 586,175 + leuA LU632_RS02880 0.34 -0.8 586,191 + leuA LU632_RS02880 0.35 -0.1 586,301 - leuA LU632_RS02880 0.42 -0.9 586,371 + leuA LU632_RS02880 0.46 -1.2 586,462 + leuA LU632_RS02880 0.52 -2.6 586,462 + leuA LU632_RS02880 0.52 -0.2 586,463 - leuA LU632_RS02880 0.52 -0.5 586,531 - leuA LU632_RS02880 0.57 -1.5 586,592 - leuA LU632_RS02880 0.60 -1.0 586,605 + leuA LU632_RS02880 0.61 -0.2
Or see this region's nucleotide sequence