Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadR and LU632_RS02560 are separated by 23 nucleotides LU632_RS02560 and ettA are separated by 317 nucleotides ettA and LU632_RS02570 are separated by 691 nucleotides
LU632_RS02555: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 507,760 to 508,986
nadR
LU632_RS02560: LU632_RS02560 - zinc-binding dehydrogenase, at 509,010 to 509,411
_RS02560
LU632_RS02565: ettA - energy-dependent translational throttle protein EttA, at 509,729 to 511,396
ettA
LU632_RS02570: LU632_RS02570 - cation-translocating P-type ATPase C-terminal domain-containing protein, at 512,088 to 512,538
_RS02570
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -2
-1
0
1 at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.800 kb on + strand, within nadR at 508.843 kb on - strand, within nadR at 508.854 kb on + strand, within nadR at 508.897 kb on - strand at 508.926 kb on + strand at 508.930 kb on + strand at 508.930 kb on + strand at 508.930 kb on - strand at 508.931 kb on - strand at 509.196 kb on + strand, within LU632_RS02560 at 509.197 kb on - strand, within LU632_RS02560 at 509.248 kb on - strand, within LU632_RS02560 at 509.314 kb on - strand, within LU632_RS02560 at 509.363 kb on + strand, within LU632_RS02560 at 509.365 kb on + strand, within LU632_RS02560 at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.485 kb on + strand at 509.533 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.537 kb on + strand at 509.637 kb on + strand at 509.638 kb on - strand at 509.660 kb on + strand at 509.660 kb on + strand at 509.661 kb on - strand at 509.676 kb on - strand at 509.731 kb on - strand at 509.731 kb on - strand at 509.753 kb on - strand at 509.753 kb on - strand at 509.755 kb on + strand at 509.756 kb on - strand at 509.798 kb on - strand at 509.867 kb on - strand at 509.879 kb on - strand at 510.103 kb on + strand, within ettA at 510.185 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.199 kb on + strand, within ettA at 510.200 kb on - strand, within ettA at 510.407 kb on - strand, within ettA at 510.535 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.666 kb on + strand, within ettA at 510.667 kb on - strand, within ettA at 510.667 kb on - strand, within ettA at 510.670 kb on + strand, within ettA at 510.671 kb on - strand, within ettA at 510.945 kb on - strand, within ettA at 510.945 kb on - strand, within ettA at 510.982 kb on + strand, within ettA at 511.074 kb on + strand, within ettA at 511.153 kb on + strand, within ettA at 511.153 kb on + strand, within ettA at 511.158 kb on - strand, within ettA at 511.158 kb on - strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.220 kb on + strand, within ettA at 511.221 kb on - strand, within ettA at 511.221 kb on - strand, within ettA at 511.264 kb on + strand at 511.264 kb on + strand at 511.265 kb on - strand at 511.265 kb on - strand at 511.398 kb on + strand at 511.399 kb on - strand at 511.399 kb on - strand at 511.573 kb on - strand at 511.597 kb on - strand at 511.660 kb on - strand at 511.674 kb on + strand at 511.688 kb on - strand at 511.858 kb on + strand at 511.859 kb on - strand at 511.862 kb on + strand at 511.862 kb on + strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.863 kb on - strand at 511.976 kb on - strand at 511.976 kb on - strand at 512.109 kb on - strand at 512.196 kb on + strand, within LU632_RS02570 at 512.209 kb on - strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.291 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.344 kb on + strand, within LU632_RS02570 at 512.345 kb on - strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.351 kb on + strand, within LU632_RS02570 at 512.352 kb on - strand, within LU632_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 508,800 + nadR LU632_RS02555 0.85 -1.2 508,800 + nadR LU632_RS02555 0.85 -0.9 508,800 + nadR LU632_RS02555 0.85 -1.5 508,843 - nadR LU632_RS02555 0.88 -0.1 508,854 + nadR LU632_RS02555 0.89 -0.0 508,897 - -1.3 508,926 + +1.3 508,930 + -1.2 508,930 + -0.8 508,930 - -1.0 508,931 - -1.3 509,196 + LU632_RS02560 0.46 -0.5 509,197 - LU632_RS02560 0.47 +0.3 509,248 - LU632_RS02560 0.59 +0.2 509,314 - LU632_RS02560 0.76 -0.3 509,363 + LU632_RS02560 0.88 -1.7 509,365 + LU632_RS02560 0.88 -0.2 509,443 + -0.5 509,443 + -0.5 509,443 + +0.9 509,444 - +0.5 509,485 + -0.0 509,533 + +0.6 509,537 + -0.3 509,537 + -0.0 509,537 + -0.3 509,637 + -0.7 509,638 - -0.2 509,660 + +0.0 509,660 + +1.3 509,661 - +0.1 509,676 - +0.1 509,731 - +1.4 509,731 - +0.2 509,753 - +0.9 509,753 - -1.1 509,755 + +1.7 509,756 - +1.1 509,798 - -0.9 509,867 - -0.3 509,879 - +0.5 510,103 + ettA LU632_RS02565 0.22 -0.1 510,185 + ettA LU632_RS02565 0.27 -0.2 510,199 + ettA LU632_RS02565 0.28 -0.1 510,199 + ettA LU632_RS02565 0.28 -0.2 510,200 - ettA LU632_RS02565 0.28 -0.1 510,407 - ettA LU632_RS02565 0.41 +0.1 510,535 + ettA LU632_RS02565 0.48 -1.0 510,666 + ettA LU632_RS02565 0.56 -0.5 510,666 + ettA LU632_RS02565 0.56 +1.5 510,666 + ettA LU632_RS02565 0.56 -0.1 510,666 + ettA LU632_RS02565 0.56 +0.8 510,666 + ettA LU632_RS02565 0.56 -0.1 510,667 - ettA LU632_RS02565 0.56 -0.6 510,667 - ettA LU632_RS02565 0.56 +1.3 510,670 + ettA LU632_RS02565 0.56 -0.6 510,671 - ettA LU632_RS02565 0.56 +0.0 510,945 - ettA LU632_RS02565 0.73 +0.5 510,945 - ettA LU632_RS02565 0.73 -1.1 510,982 + ettA LU632_RS02565 0.75 -0.6 511,074 + ettA LU632_RS02565 0.81 +1.3 511,153 + ettA LU632_RS02565 0.85 +0.5 511,153 + ettA LU632_RS02565 0.85 +0.5 511,158 - ettA LU632_RS02565 0.86 -0.7 511,158 - ettA LU632_RS02565 0.86 -0.1 511,220 + ettA LU632_RS02565 0.89 -0.1 511,220 + ettA LU632_RS02565 0.89 -0.3 511,220 + ettA LU632_RS02565 0.89 -0.7 511,220 + ettA LU632_RS02565 0.89 +0.3 511,220 + ettA LU632_RS02565 0.89 -0.3 511,220 + ettA LU632_RS02565 0.89 +0.4 511,220 + ettA LU632_RS02565 0.89 +0.3 511,220 + ettA LU632_RS02565 0.89 -0.2 511,221 - ettA LU632_RS02565 0.89 +1.4 511,221 - ettA LU632_RS02565 0.89 +0.6 511,264 + -0.7 511,264 + +0.3 511,265 - +0.1 511,265 - -2.5 511,398 + +0.3 511,399 - -0.3 511,399 - +0.1 511,573 - +0.1 511,597 - -2.7 511,660 - +0.7 511,674 + -0.2 511,688 - -1.1 511,858 + -0.6 511,859 - +0.9 511,862 + +0.2 511,862 + -0.1 511,863 - +0.3 511,863 - -0.2 511,863 - -0.1 511,976 - +0.2 511,976 - -0.0 512,109 - -0.1 512,196 + LU632_RS02570 0.24 +0.2 512,209 - LU632_RS02570 0.27 +0.3 512,291 + LU632_RS02570 0.45 +0.7 512,291 + LU632_RS02570 0.45 +0.4 512,291 + LU632_RS02570 0.45 +1.7 512,344 + LU632_RS02570 0.57 +0.0 512,344 + LU632_RS02570 0.57 -0.5 512,345 - LU632_RS02570 0.57 -0.1 512,351 + LU632_RS02570 0.58 +0.9 512,351 + LU632_RS02570 0.58 -0.3 512,352 - LU632_RS02570 0.59 +0.0
Or see this region's nucleotide sequence