Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmY and LU632_RS02490 are separated by 140 nucleotides LU632_RS02490 and LU632_RS02495 are separated by 96 nucleotides LU632_RS02495 and LU632_RS02500 are separated by 245 nucleotides
LU632_RS02485: osmY - molecular chaperone OsmY, at 494,105 to 494,719
osmY
LU632_RS02490: LU632_RS02490 - DUF1328 domain-containing protein, at 494,860 to 495,021
_RS02490
LU632_RS02495: LU632_RS02495 - IS256 family transposase, at 495,118 to 496,326
_RS02495
LU632_RS02500: LU632_RS02500 - DDE-type integrase/transposase/recombinase, at 496,572 to 497,194
_RS02500
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2 at 494.134 kb on + strand at 494.135 kb on - strand at 494.142 kb on + strand at 494.143 kb on - strand at 494.171 kb on + strand, within osmY at 494.188 kb on + strand, within osmY at 494.212 kb on + strand, within osmY at 494.329 kb on + strand, within osmY at 494.330 kb on - strand, within osmY at 494.342 kb on - strand, within osmY at 494.497 kb on - strand, within osmY at 494.542 kb on + strand, within osmY at 494.542 kb on + strand, within osmY at 494.543 kb on - strand, within osmY at 494.543 kb on - strand, within osmY at 494.575 kb on + strand, within osmY at 494.702 kb on - strand at 494.772 kb on - strand at 494.772 kb on - strand at 494.781 kb on + strand at 494.782 kb on - strand at 494.782 kb on - strand at 494.787 kb on - strand at 494.860 kb on - strand at 494.934 kb on + strand, within LU632_RS02490 at 494.976 kb on + strand, within LU632_RS02490 at 494.977 kb on - strand, within LU632_RS02490 at 495.350 kb on + strand, within LU632_RS02495 at 495.350 kb on + strand, within LU632_RS02495 at 496.038 kb on - strand, within LU632_RS02495 at 496.352 kb on + strand at 496.352 kb on + strand at 496.433 kb on + strand at 496.434 kb on - strand at 496.434 kb on - strand at 496.435 kb on + strand at 496.435 kb on + strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.436 kb on - strand at 496.511 kb on + strand at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.689 kb on + strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.690 kb on - strand, within LU632_RS02500 at 496.709 kb on - strand, within LU632_RS02500 at 496.979 kb on - strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.052 kb on + strand, within LU632_RS02500 at 497.053 kb on - strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.083 kb on + strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.084 kb on - strand, within LU632_RS02500 at 497.085 kb on + strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.086 kb on - strand, within LU632_RS02500 at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.160 kb on + strand at 497.161 kb on - strand at 497.177 kb on + strand at 497.191 kb on + strand at 497.222 kb on + strand at 497.223 kb on - strand at 497.253 kb on - strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.299 kb on + strand at 497.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 494,134 + +0.0 494,135 - +0.1 494,142 + -0.2 494,143 - +0.3 494,171 + osmY LU632_RS02485 0.11 +0.3 494,188 + osmY LU632_RS02485 0.13 +0.3 494,212 + osmY LU632_RS02485 0.17 +1.6 494,329 + osmY LU632_RS02485 0.36 +0.6 494,330 - osmY LU632_RS02485 0.37 +1.0 494,342 - osmY LU632_RS02485 0.39 +0.1 494,497 - osmY LU632_RS02485 0.64 -0.5 494,542 + osmY LU632_RS02485 0.71 +1.1 494,542 + osmY LU632_RS02485 0.71 +1.5 494,543 - osmY LU632_RS02485 0.71 +0.7 494,543 - osmY LU632_RS02485 0.71 -0.1 494,575 + osmY LU632_RS02485 0.76 +2.3 494,702 - -0.3 494,772 - +0.6 494,772 - -0.5 494,781 + +0.4 494,782 - -0.1 494,782 - +0.6 494,787 - -0.3 494,860 - +0.4 494,934 + LU632_RS02490 0.46 +1.4 494,976 + LU632_RS02490 0.72 +0.2 494,977 - LU632_RS02490 0.72 -0.2 495,350 + LU632_RS02495 0.19 -0.1 495,350 + LU632_RS02495 0.19 -0.7 496,038 - LU632_RS02495 0.76 +0.1 496,352 + +0.3 496,352 + -0.4 496,433 + -0.5 496,434 - -0.1 496,434 - +0.0 496,435 + +1.3 496,435 + -0.1 496,436 - +0.2 496,436 - +0.3 496,436 - +0.4 496,436 - -0.3 496,511 + -0.4 496,689 + LU632_RS02500 0.19 +0.3 496,689 + LU632_RS02500 0.19 +1.7 496,689 + LU632_RS02500 0.19 +1.1 496,689 + LU632_RS02500 0.19 -0.3 496,689 + LU632_RS02500 0.19 -0.1 496,690 - LU632_RS02500 0.19 -0.7 496,690 - LU632_RS02500 0.19 -0.8 496,690 - LU632_RS02500 0.19 +0.3 496,690 - LU632_RS02500 0.19 -0.8 496,690 - LU632_RS02500 0.19 +0.3 496,709 - LU632_RS02500 0.22 -1.5 496,979 - LU632_RS02500 0.65 +0.5 497,052 + LU632_RS02500 0.77 +0.9 497,052 + LU632_RS02500 0.77 +0.5 497,052 + LU632_RS02500 0.77 -0.9 497,053 - LU632_RS02500 0.77 -0.3 497,083 + LU632_RS02500 0.82 -0.2 497,083 + LU632_RS02500 0.82 -0.8 497,083 + LU632_RS02500 0.82 +2.3 497,084 - LU632_RS02500 0.82 -0.2 497,084 - LU632_RS02500 0.82 +0.1 497,084 - LU632_RS02500 0.82 -1.9 497,085 + LU632_RS02500 0.82 +1.0 497,086 - LU632_RS02500 0.83 -0.5 497,086 - LU632_RS02500 0.83 +1.4 497,086 - LU632_RS02500 0.83 +0.0 497,160 + -0.6 497,160 + +0.4 497,160 + +0.0 497,160 + -0.6 497,161 - +1.3 497,177 + +0.3 497,191 + +1.3 497,222 + +0.2 497,223 - +0.0 497,253 - +0.1 497,299 + -0.7 497,299 + +0.6 497,299 + +0.2 497,300 - -0.1
Or see this region's nucleotide sequence