Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02250 and LU632_RS02255 are separated by 522 nucleotides LU632_RS02255 and LU632_RS02260 are separated by 83 nucleotides LU632_RS02260 and LU632_RS02265 are separated by 123 nucleotides
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
LU632_RS02260: LU632_RS02260 - pirin family protein, at 446,768 to 447,472
_RS02260
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
Position (kb) 446
447 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.263 kb on - strand, within LU632_RS02250 at 445.265 kb on - strand, within LU632_RS02250 at 445.301 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.505 kb on - strand at 445.585 kb on - strand at 445.585 kb on - strand at 445.633 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.720 kb on - strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.913 kb on + strand at 445.913 kb on + strand at 445.957 kb on - strand at 445.966 kb on + strand at 446.007 kb on + strand at 446.032 kb on - strand at 446.042 kb on - strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.049 kb on - strand at 446.061 kb on - strand at 446.064 kb on - strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.091 kb on + strand at 446.092 kb on - strand at 446.195 kb on + strand, within LU632_RS02255 at 446.355 kb on - strand, within LU632_RS02255 at 446.378 kb on + strand, within LU632_RS02255 at 446.513 kb on + strand, within LU632_RS02255 at 446.514 kb on - strand, within LU632_RS02255 at 446.582 kb on + strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.712 kb on + strand at 446.712 kb on - strand at 446.740 kb on - strand at 446.799 kb on - strand at 446.842 kb on + strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.925 kb on + strand, within LU632_RS02260 at 446.926 kb on - strand, within LU632_RS02260 at 446.950 kb on + strand, within LU632_RS02260 at 446.972 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.122 kb on + strand, within LU632_RS02260 at 447.176 kb on + strand, within LU632_RS02260 at 447.297 kb on + strand, within LU632_RS02260 at 447.343 kb on + strand, within LU632_RS02260 at 447.363 kb on + strand, within LU632_RS02260 at 447.387 kb on + strand, within LU632_RS02260 at 447.506 kb on + strand at 447.507 kb on - strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 445,263 - LU632_RS02250 0.73 -1.0 445,265 - LU632_RS02250 0.73 +0.6 445,301 + LU632_RS02250 0.76 -0.7 445,304 + LU632_RS02250 0.77 -1.4 445,304 + LU632_RS02250 0.77 +0.2 445,392 + LU632_RS02250 0.84 +0.2 445,392 + LU632_RS02250 0.84 -0.7 445,392 + LU632_RS02250 0.84 -0.6 445,393 - LU632_RS02250 0.84 +1.0 445,393 - LU632_RS02250 0.84 +0.9 445,393 - LU632_RS02250 0.84 +0.2 445,476 + -0.6 445,476 + -0.7 445,476 + -0.2 445,476 + -0.0 445,505 - +1.9 445,585 - -0.7 445,585 - -0.1 445,633 - -0.2 445,713 - +0.9 445,713 - -0.2 445,720 - +0.4 445,725 + +0.2 445,725 + +0.3 445,725 + -0.5 445,725 + -0.9 445,725 + +1.1 445,726 - +0.1 445,726 - +0.4 445,726 - -0.2 445,913 + -0.4 445,913 + -0.3 445,957 - +0.3 445,966 + -0.4 446,007 + +0.1 446,032 - +1.1 446,042 - -0.5 446,046 + +0.9 446,046 + +0.0 446,046 + +0.3 446,046 + +1.2 446,049 - -0.1 446,061 - +0.3 446,064 - -0.2 446,089 + +0.9 446,089 + +0.4 446,089 + +2.3 446,089 + -1.1 446,090 - -0.6 446,090 - -0.5 446,090 - +0.4 446,091 + +0.0 446,092 - -0.1 446,195 + LU632_RS02255 0.15 -1.9 446,355 - LU632_RS02255 0.43 -0.1 446,378 + LU632_RS02255 0.47 +0.3 446,513 + LU632_RS02255 0.70 +0.5 446,514 - LU632_RS02255 0.70 -0.3 446,582 + LU632_RS02255 0.82 -0.8 446,583 - LU632_RS02255 0.82 +0.6 446,583 - LU632_RS02255 0.82 +0.5 446,712 + -0.3 446,712 - -0.2 446,740 - -0.7 446,799 - -0.4 446,842 + LU632_RS02260 0.10 +0.5 446,864 - LU632_RS02260 0.14 +0.9 446,864 - LU632_RS02260 0.14 +0.2 446,864 - LU632_RS02260 0.14 +1.3 446,891 + LU632_RS02260 0.17 -0.6 446,891 + LU632_RS02260 0.17 -0.9 446,922 - LU632_RS02260 0.22 +0.2 446,922 - LU632_RS02260 0.22 -0.0 446,925 + LU632_RS02260 0.22 +0.2 446,926 - LU632_RS02260 0.22 -0.2 446,950 + LU632_RS02260 0.26 -0.1 446,972 + LU632_RS02260 0.29 -0.1 447,011 + LU632_RS02260 0.34 -0.1 447,011 + LU632_RS02260 0.34 +0.9 447,011 + LU632_RS02260 0.34 +0.1 447,122 + LU632_RS02260 0.50 +0.9 447,176 + LU632_RS02260 0.58 -0.6 447,297 + LU632_RS02260 0.75 -0.2 447,343 + LU632_RS02260 0.82 -0.1 447,363 + LU632_RS02260 0.84 +0.9 447,387 + LU632_RS02260 0.88 +0.2 447,506 + -0.2 447,507 - -0.3 447,511 + -0.3 447,511 + +1.5 447,512 - -0.0 447,512 - -1.9 447,512 - -0.2 447,554 + +0.4
Or see this region's nucleotide sequence