Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02245 and LU632_RS02250 are separated by 459 nucleotides LU632_RS02250 and LU632_RS02255 are separated by 522 nucleotides
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1
2 at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand at 444.397 kb on + strand at 444.398 kb on - strand at 444.401 kb on + strand at 444.416 kb on + strand at 444.416 kb on + strand at 444.417 kb on - strand at 444.418 kb on + strand at 444.493 kb on + strand at 444.597 kb on - strand, within LU632_RS02250 at 444.824 kb on + strand, within LU632_RS02250 at 444.825 kb on - strand, within LU632_RS02250 at 444.828 kb on + strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.847 kb on + strand, within LU632_RS02250 at 444.848 kb on - strand, within LU632_RS02250 at 444.922 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.978 kb on + strand, within LU632_RS02250 at 444.992 kb on + strand, within LU632_RS02250 at 444.992 kb on + strand, within LU632_RS02250 at 444.993 kb on - strand, within LU632_RS02250 at 445.035 kb on + strand, within LU632_RS02250 at 445.055 kb on + strand, within LU632_RS02250 at 445.056 kb on - strand, within LU632_RS02250 at 445.106 kb on + strand, within LU632_RS02250 at 445.263 kb on - strand, within LU632_RS02250 at 445.265 kb on - strand, within LU632_RS02250 at 445.301 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.304 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.392 kb on + strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.393 kb on - strand, within LU632_RS02250 at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.476 kb on + strand at 445.505 kb on - strand at 445.585 kb on - strand at 445.585 kb on - strand at 445.633 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.720 kb on - strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.725 kb on + strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.726 kb on - strand at 445.913 kb on + strand at 445.913 kb on + strand at 445.957 kb on - strand at 445.966 kb on + strand at 446.007 kb on + strand at 446.032 kb on - strand at 446.042 kb on - strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.046 kb on + strand at 446.049 kb on - strand at 446.061 kb on - strand at 446.064 kb on - strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.089 kb on + strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.090 kb on - strand at 446.091 kb on + strand at 446.092 kb on - strand at 446.195 kb on + strand, within LU632_RS02255 at 446.355 kb on - strand, within LU632_RS02255 at 446.378 kb on + strand, within LU632_RS02255 at 446.513 kb on + strand, within LU632_RS02255 at 446.514 kb on - strand, within LU632_RS02255 at 446.582 kb on + strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255 at 446.583 kb on - strand, within LU632_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 443,478 - +0.1 443,510 + -0.2 443,516 + +0.9 443,517 - -0.7 443,520 - +2.3 443,523 + +0.5 443,524 - +0.1 443,560 + LU632_RS02245 0.15 -0.2 443,567 + LU632_RS02245 0.16 -0.2 443,569 + LU632_RS02245 0.17 -0.6 443,570 - LU632_RS02245 0.17 -0.2 443,570 - LU632_RS02245 0.17 +0.5 443,587 + LU632_RS02245 0.21 +0.4 443,587 + LU632_RS02245 0.21 -0.2 443,619 - LU632_RS02245 0.29 +0.0 443,633 + LU632_RS02245 0.32 -0.3 443,635 + LU632_RS02245 0.32 -0.4 443,636 - LU632_RS02245 0.33 -0.0 443,636 - LU632_RS02245 0.33 +2.2 443,636 - LU632_RS02245 0.33 -0.1 443,759 + LU632_RS02245 0.62 +0.0 443,759 + LU632_RS02245 0.62 -0.0 443,760 - LU632_RS02245 0.62 -0.8 443,760 - LU632_RS02245 0.62 -0.4 443,760 - LU632_RS02245 0.62 -1.9 443,760 - LU632_RS02245 0.62 +0.7 443,760 - LU632_RS02245 0.62 +0.7 443,762 - LU632_RS02245 0.63 +0.6 443,795 + LU632_RS02245 0.70 -0.2 443,865 - LU632_RS02245 0.87 +0.9 443,869 + LU632_RS02245 0.88 -0.5 443,870 - LU632_RS02245 0.88 +0.3 443,927 + -0.1 443,927 + -0.1 443,927 + +0.9 443,928 - +0.5 443,928 - -0.6 443,928 - -0.3 443,959 + -0.0 444,022 + -0.4 444,022 + +0.3 444,022 + +0.3 444,023 - +0.3 444,397 + +0.2 444,398 - -0.4 444,401 + -0.3 444,416 + -0.4 444,416 + -0.2 444,417 - +0.9 444,418 + -0.0 444,493 + -0.2 444,597 - LU632_RS02250 0.18 -1.4 444,824 + LU632_RS02250 0.37 +0.1 444,825 - LU632_RS02250 0.37 -0.1 444,828 + LU632_RS02250 0.37 +0.9 444,829 - LU632_RS02250 0.37 +0.3 444,829 - LU632_RS02250 0.37 +0.4 444,830 + LU632_RS02250 0.37 -0.1 444,830 + LU632_RS02250 0.37 -0.2 444,831 - LU632_RS02250 0.37 -0.7 444,831 - LU632_RS02250 0.37 -0.2 444,847 + LU632_RS02250 0.39 -0.5 444,848 - LU632_RS02250 0.39 +0.1 444,922 + LU632_RS02250 0.45 +0.3 444,978 + LU632_RS02250 0.50 +0.2 444,978 + LU632_RS02250 0.50 +0.6 444,978 + LU632_RS02250 0.50 +0.2 444,992 + LU632_RS02250 0.51 -0.3 444,992 + LU632_RS02250 0.51 -0.2 444,993 - LU632_RS02250 0.51 +0.6 445,035 + LU632_RS02250 0.54 -0.3 445,055 + LU632_RS02250 0.56 -0.0 445,056 - LU632_RS02250 0.56 +0.1 445,106 + LU632_RS02250 0.60 -1.9 445,263 - LU632_RS02250 0.73 -1.0 445,265 - LU632_RS02250 0.73 +0.6 445,301 + LU632_RS02250 0.76 -0.7 445,304 + LU632_RS02250 0.77 -1.4 445,304 + LU632_RS02250 0.77 +0.2 445,392 + LU632_RS02250 0.84 +0.2 445,392 + LU632_RS02250 0.84 -0.7 445,392 + LU632_RS02250 0.84 -0.6 445,393 - LU632_RS02250 0.84 +1.0 445,393 - LU632_RS02250 0.84 +0.9 445,393 - LU632_RS02250 0.84 +0.2 445,476 + -0.6 445,476 + -0.7 445,476 + -0.2 445,476 + -0.0 445,505 - +1.9 445,585 - -0.7 445,585 - -0.1 445,633 - -0.2 445,713 - +0.9 445,713 - -0.2 445,720 - +0.4 445,725 + +0.2 445,725 + +0.3 445,725 + -0.5 445,725 + -0.9 445,725 + +1.1 445,726 - +0.1 445,726 - +0.4 445,726 - -0.2 445,913 + -0.4 445,913 + -0.3 445,957 - +0.3 445,966 + -0.4 446,007 + +0.1 446,032 - +1.1 446,042 - -0.5 446,046 + +0.9 446,046 + +0.0 446,046 + +0.3 446,046 + +1.2 446,049 - -0.1 446,061 - +0.3 446,064 - -0.2 446,089 + +0.9 446,089 + +0.4 446,089 + +2.3 446,089 + -1.1 446,090 - -0.6 446,090 - -0.5 446,090 - +0.4 446,091 + +0.0 446,092 - -0.1 446,195 + LU632_RS02255 0.15 -1.9 446,355 - LU632_RS02255 0.43 -0.1 446,378 + LU632_RS02255 0.47 +0.3 446,513 + LU632_RS02255 0.70 +0.5 446,514 - LU632_RS02255 0.70 -0.3 446,582 + LU632_RS02255 0.82 -0.8 446,583 - LU632_RS02255 0.82 +0.6 446,583 - LU632_RS02255 0.82 +0.5
Or see this region's nucleotide sequence