Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02240 and LU632_RS02245 are separated by 132 nucleotides LU632_RS02245 and LU632_RS02250 are separated by 459 nucleotides
LU632_RS02240: LU632_RS02240 - hypothetical protein, at 443,061 to 443,366
_RS02240
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
Position (kb) 443
444 Strain fitness (log2 ratio) -2
-1
0
1
2 at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.856 kb on + strand at 442.856 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.962 kb on - strand at 443.003 kb on - strand at 443.077 kb on - strand at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.112 kb on - strand, within LU632_RS02240 at 443.113 kb on + strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.167 kb on - strand, within LU632_RS02240 at 443.229 kb on + strand, within LU632_RS02240 at 443.230 kb on - strand, within LU632_RS02240 at 443.232 kb on - strand, within LU632_RS02240 at 443.240 kb on + strand, within LU632_RS02240 at 443.291 kb on - strand, within LU632_RS02240 at 443.293 kb on - strand, within LU632_RS02240 at 443.321 kb on - strand, within LU632_RS02240 at 443.341 kb on - strand at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand at 444.397 kb on + strand at 444.398 kb on - strand at 444.401 kb on + strand at 444.416 kb on + strand at 444.416 kb on + strand at 444.417 kb on - strand at 444.418 kb on + strand at 444.493 kb on + strand at 444.597 kb on - strand, within LU632_RS02250 at 444.824 kb on + strand, within LU632_RS02250 at 444.825 kb on - strand, within LU632_RS02250 at 444.828 kb on + strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.847 kb on + strand, within LU632_RS02250 at 444.848 kb on - strand, within LU632_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 442,553 + -0.1 442,676 - +0.2 442,676 - +0.9 442,758 + +0.1 442,785 + +0.7 442,785 + +0.0 442,785 + -0.3 442,785 + +0.4 442,786 - -0.1 442,786 - -0.5 442,786 - -0.4 442,786 - -0.5 442,786 - +0.2 442,856 + +0.2 442,856 + +0.1 442,961 + +0.0 442,961 + +0.7 442,961 + +1.9 442,962 - +0.1 443,003 - +0.6 443,077 - -0.2 443,111 + LU632_RS02240 0.16 +0.8 443,111 + LU632_RS02240 0.16 +1.7 443,111 + LU632_RS02240 0.16 +0.3 443,112 - LU632_RS02240 0.17 +0.1 443,113 + LU632_RS02240 0.17 -0.1 443,114 - LU632_RS02240 0.17 -0.2 443,114 - LU632_RS02240 0.17 +0.5 443,167 - LU632_RS02240 0.35 +0.4 443,229 + LU632_RS02240 0.55 +0.7 443,230 - LU632_RS02240 0.55 +0.3 443,232 - LU632_RS02240 0.56 +0.2 443,240 + LU632_RS02240 0.58 +1.5 443,291 - LU632_RS02240 0.75 +0.4 443,293 - LU632_RS02240 0.76 -0.4 443,321 - LU632_RS02240 0.85 +1.3 443,341 - +0.9 443,478 - +0.1 443,510 + -0.2 443,516 + +0.9 443,517 - -0.7 443,520 - +2.3 443,523 + +0.5 443,524 - +0.1 443,560 + LU632_RS02245 0.15 -0.2 443,567 + LU632_RS02245 0.16 -0.2 443,569 + LU632_RS02245 0.17 -0.6 443,570 - LU632_RS02245 0.17 -0.2 443,570 - LU632_RS02245 0.17 +0.5 443,587 + LU632_RS02245 0.21 +0.4 443,587 + LU632_RS02245 0.21 -0.2 443,619 - LU632_RS02245 0.29 +0.0 443,633 + LU632_RS02245 0.32 -0.3 443,635 + LU632_RS02245 0.32 -0.4 443,636 - LU632_RS02245 0.33 -0.0 443,636 - LU632_RS02245 0.33 +2.2 443,636 - LU632_RS02245 0.33 -0.1 443,759 + LU632_RS02245 0.62 +0.0 443,759 + LU632_RS02245 0.62 -0.0 443,760 - LU632_RS02245 0.62 -0.8 443,760 - LU632_RS02245 0.62 -0.4 443,760 - LU632_RS02245 0.62 -1.9 443,760 - LU632_RS02245 0.62 +0.7 443,760 - LU632_RS02245 0.62 +0.7 443,762 - LU632_RS02245 0.63 +0.6 443,795 + LU632_RS02245 0.70 -0.2 443,865 - LU632_RS02245 0.87 +0.9 443,869 + LU632_RS02245 0.88 -0.5 443,870 - LU632_RS02245 0.88 +0.3 443,927 + -0.1 443,927 + -0.1 443,927 + +0.9 443,928 - +0.5 443,928 - -0.6 443,928 - -0.3 443,959 + -0.0 444,022 + -0.4 444,022 + +0.3 444,022 + +0.3 444,023 - +0.3 444,397 + +0.2 444,398 - -0.4 444,401 + -0.3 444,416 + -0.4 444,416 + -0.2 444,417 - +0.9 444,418 + -0.0 444,493 + -0.2 444,597 - LU632_RS02250 0.18 -1.4 444,824 + LU632_RS02250 0.37 +0.1 444,825 - LU632_RS02250 0.37 -0.1 444,828 + LU632_RS02250 0.37 +0.9 444,829 - LU632_RS02250 0.37 +0.3 444,829 - LU632_RS02250 0.37 +0.4 444,830 + LU632_RS02250 0.37 -0.1 444,830 + LU632_RS02250 0.37 -0.2 444,831 - LU632_RS02250 0.37 -0.7 444,831 - LU632_RS02250 0.37 -0.2 444,847 + LU632_RS02250 0.39 -0.5 444,848 - LU632_RS02250 0.39 +0.1
Or see this region's nucleotide sequence