Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yraP and diaA are separated by 10 nucleotides diaA and LU632_RS02220 are separated by 32 nucleotides LU632_RS02220 and LU632_RS02225 overlap by 43 nucleotides
LU632_RS02210: yraP - divisome-associated lipoprotein YraP, at 437,284 to 437,856
yraP
LU632_RS02215: diaA - DnaA initiator-associating protein DiaA, at 437,867 to 438,457
diaA
LU632_RS02220: LU632_RS02220 - YraN family protein, at 438,490 to 438,882
_RS02220
LU632_RS02225: LU632_RS02225 - penicillin-binding protein activator, at 438,840 to 440,888
_RS02225
Position (kb) 438
439 Strain fitness (log2 ratio) -1
0
1
2
3 at 437.537 kb on + strand, within yraP at 437.538 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.816 kb on - strand at 437.830 kb on + strand at 437.858 kb on + strand at 437.859 kb on - strand at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.933 kb on - strand, within diaA at 437.996 kb on + strand, within diaA at 437.996 kb on + strand, within diaA at 437.997 kb on - strand, within diaA at 437.997 kb on - strand, within diaA at 438.049 kb on + strand, within diaA at 438.083 kb on + strand, within diaA at 438.084 kb on - strand, within diaA at 438.098 kb on - strand, within diaA at 438.112 kb on + strand, within diaA at 438.211 kb on + strand, within diaA at 438.331 kb on + strand, within diaA at 438.419 kb on + strand at 438.419 kb on + strand at 438.420 kb on - strand at 438.420 kb on - strand at 438.422 kb on - strand at 438.422 kb on - strand at 438.442 kb on + strand at 438.547 kb on + strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.602 kb on - strand, within LU632_RS02220 at 438.667 kb on + strand, within LU632_RS02220 at 438.668 kb on - strand, within LU632_RS02220 at 438.676 kb on - strand, within LU632_RS02220 at 438.714 kb on + strand, within LU632_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 437,537 + yraP LU632_RS02210 0.44 +0.3 437,538 - yraP LU632_RS02210 0.44 -0.1 437,683 - yraP LU632_RS02210 0.70 -0.9 437,683 - yraP LU632_RS02210 0.70 +0.6 437,683 - yraP LU632_RS02210 0.70 +0.3 437,816 - +0.6 437,830 + -0.9 437,858 + -0.7 437,859 - +0.0 437,932 + diaA LU632_RS02215 0.11 -0.7 437,932 + diaA LU632_RS02215 0.11 -0.5 437,932 + diaA LU632_RS02215 0.11 +0.9 437,933 - diaA LU632_RS02215 0.11 +1.1 437,996 + diaA LU632_RS02215 0.22 -0.6 437,996 + diaA LU632_RS02215 0.22 -0.4 437,997 - diaA LU632_RS02215 0.22 +0.2 437,997 - diaA LU632_RS02215 0.22 +0.3 438,049 + diaA LU632_RS02215 0.31 +0.2 438,083 + diaA LU632_RS02215 0.37 -0.8 438,084 - diaA LU632_RS02215 0.37 -0.2 438,098 - diaA LU632_RS02215 0.39 +3.2 438,112 + diaA LU632_RS02215 0.41 +0.1 438,211 + diaA LU632_RS02215 0.58 +0.7 438,331 + diaA LU632_RS02215 0.79 -0.5 438,419 + -0.3 438,419 + +0.2 438,420 - +1.9 438,420 - -0.3 438,422 - -0.1 438,422 - +0.9 438,442 + +0.0 438,547 + LU632_RS02220 0.15 +0.7 438,548 - LU632_RS02220 0.15 +0.8 438,548 - LU632_RS02220 0.15 -0.3 438,602 - LU632_RS02220 0.28 -0.2 438,667 + LU632_RS02220 0.45 +1.0 438,668 - LU632_RS02220 0.45 +0.6 438,676 - LU632_RS02220 0.47 -0.3 438,714 + LU632_RS02220 0.57 -0.7
Or see this region's nucleotide sequence