Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02110 and LU632_RS02115 are separated by 2 nucleotides LU632_RS02115 and ppa are separated by 304 nucleotides ppa and LU632_RS02125 are separated by 468 nucleotides
LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213
_RS02110
LU632_RS02115: LU632_RS02115 - gamma-glutamylcyclotransferase, at 419,216 to 419,569
_RS02115
LU632_RS02120: ppa - inorganic diphosphatase, at 419,874 to 420,404
ppa
LU632_RS02125: LU632_RS02125 - methyl-accepting chemotaxis protein, at 420,873 to 422,435
_RS02125
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.922 kb on - strand at 418.922 kb on - strand at 419.001 kb on - strand at 419.001 kb on - strand at 419.080 kb on + strand at 419.080 kb on + strand at 419.144 kb on + strand at 419.149 kb on + strand at 419.150 kb on - strand at 419.151 kb on + strand at 419.322 kb on - strand, within LU632_RS02115 at 419.635 kb on + strand at 419.641 kb on + strand at 419.642 kb on - strand at 419.680 kb on + strand at 419.802 kb on - strand at 420.471 kb on - strand at 420.561 kb on - strand at 420.676 kb on - strand at 420.710 kb on + strand at 420.793 kb on - strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.820 kb on + strand at 420.869 kb on + strand at 420.871 kb on + strand at 421.025 kb on - strand at 421.050 kb on - strand, within LU632_RS02125 at 421.059 kb on + strand, within LU632_RS02125 at 421.059 kb on + strand, within LU632_RS02125 at 421.102 kb on + strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.149 kb on + strand, within LU632_RS02125 at 421.149 kb on + strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.214 kb on + strand, within LU632_RS02125 at 421.214 kb on + strand, within LU632_RS02125 at 421.255 kb on - strand, within LU632_RS02125 at 421.255 kb on - strand, within LU632_RS02125 at 421.304 kb on + strand, within LU632_RS02125 at 421.314 kb on + strand, within LU632_RS02125 at 421.315 kb on - strand, within LU632_RS02125 at 421.315 kb on - strand, within LU632_RS02125 at 421.364 kb on + strand, within LU632_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 418,922 - -2.7 418,922 - -1.5 419,001 - +0.9 419,001 - -0.1 419,080 + +0.3 419,080 + +1.1 419,144 + -1.8 419,149 + -2.6 419,150 - -1.1 419,151 + -1.4 419,322 - LU632_RS02115 0.30 +1.9 419,635 + -0.1 419,641 + +0.1 419,642 - -0.9 419,680 + -0.3 419,802 - +0.7 420,471 - -0.1 420,561 - +0.6 420,676 - +0.6 420,710 + +0.3 420,793 - -1.4 420,796 + +0.2 420,796 + -0.4 420,820 + +0.0 420,869 + -0.7 420,871 + +0.4 421,025 - +0.9 421,050 - LU632_RS02125 0.11 -0.4 421,059 + LU632_RS02125 0.12 -0.0 421,059 + LU632_RS02125 0.12 -0.2 421,102 + LU632_RS02125 0.15 -0.1 421,103 - LU632_RS02125 0.15 +0.2 421,103 - LU632_RS02125 0.15 -0.7 421,103 - LU632_RS02125 0.15 -0.2 421,103 - LU632_RS02125 0.15 +0.1 421,149 + LU632_RS02125 0.18 +0.0 421,149 + LU632_RS02125 0.18 +0.9 421,150 - LU632_RS02125 0.18 +0.6 421,150 - LU632_RS02125 0.18 -0.2 421,150 - LU632_RS02125 0.18 +0.9 421,150 - LU632_RS02125 0.18 -1.7 421,150 - LU632_RS02125 0.18 +0.1 421,150 - LU632_RS02125 0.18 -0.7 421,214 + LU632_RS02125 0.22 +0.1 421,214 + LU632_RS02125 0.22 +0.2 421,255 - LU632_RS02125 0.24 +0.4 421,255 - LU632_RS02125 0.24 -0.2 421,304 + LU632_RS02125 0.28 +0.2 421,314 + LU632_RS02125 0.28 +1.1 421,315 - LU632_RS02125 0.28 -0.3 421,315 - LU632_RS02125 0.28 -0.7 421,364 + LU632_RS02125 0.31 -0.2
Or see this region's nucleotide sequence