Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01675 and LU632_RS01680 overlap by 14 nucleotides LU632_RS01680 and LU632_RS01685 are separated by 5 nucleotides LU632_RS01685 and LU632_RS01690 are separated by 48 nucleotides LU632_RS01690 and LU632_RS01695 are separated by 0 nucleotides
LU632_RS01675: LU632_RS01675 - phage tail tape measure protein, at 329,499 to 332,471
_RS01675
LU632_RS01680: LU632_RS01680 - GpE family phage tail protein, at 332,458 to 332,613
_RS01680
LU632_RS01685: LU632_RS01685 - phage tail assembly protein, at 332,619 to 332,936
_RS01685
LU632_RS01690: LU632_RS01690 - phage major tail tube protein, at 332,985 to 333,500
_RS01690
LU632_RS01695: LU632_RS01695 - phage tail sheath family protein, at 333,501 to 334,682
_RS01695
Position (kb) 332
333 Strain fitness (log2 ratio) -2
-1
0
1 at 331.976 kb on - strand, within LU632_RS01675 at 332.039 kb on - strand, within LU632_RS01675 at 332.039 kb on - strand, within LU632_RS01675 at 332.069 kb on + strand, within LU632_RS01675 at 332.150 kb on + strand, within LU632_RS01675 at 332.151 kb on - strand, within LU632_RS01675 at 332.151 kb on - strand, within LU632_RS01675 at 332.151 kb on - strand, within LU632_RS01675 at 332.162 kb on + strand, within LU632_RS01675 at 332.298 kb on + strand at 332.454 kb on + strand at 332.454 kb on + strand at 332.455 kb on - strand at 332.455 kb on - strand at 332.455 kb on - strand at 332.455 kb on - strand at 332.455 kb on - strand at 332.567 kb on - strand, within LU632_RS01680 at 332.567 kb on - strand, within LU632_RS01680 at 332.795 kb on + strand, within LU632_RS01685 at 332.863 kb on - strand, within LU632_RS01685 at 332.870 kb on + strand, within LU632_RS01685 at 332.871 kb on - strand, within LU632_RS01685 at 332.974 kb on + strand at 332.974 kb on + strand at 333.012 kb on - strand at 333.029 kb on + strand at 333.049 kb on + strand, within LU632_RS01690 at 333.098 kb on + strand, within LU632_RS01690 at 333.099 kb on - strand, within LU632_RS01690 at 333.106 kb on + strand, within LU632_RS01690 at 333.106 kb on + strand, within LU632_RS01690 at 333.107 kb on - strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.109 kb on + strand, within LU632_RS01690 at 333.110 kb on - strand, within LU632_RS01690 at 333.110 kb on - strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.229 kb on + strand, within LU632_RS01690 at 333.230 kb on - strand, within LU632_RS01690 at 333.232 kb on + strand, within LU632_RS01690 at 333.233 kb on - strand, within LU632_RS01690 at 333.277 kb on + strand, within LU632_RS01690 at 333.278 kb on - strand, within LU632_RS01690 at 333.354 kb on + strand, within LU632_RS01690 at 333.444 kb on - strand, within LU632_RS01690 at 333.502 kb on + strand at 333.502 kb on + strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.503 kb on - strand at 333.538 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.595 kb on + strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.596 kb on - strand at 333.599 kb on + strand at 333.599 kb on + strand at 333.762 kb on - strand, within LU632_RS01695 at 333.762 kb on - strand, within LU632_RS01695 at 333.821 kb on + strand, within LU632_RS01695 at 333.823 kb on + strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.839 kb on - strand, within LU632_RS01695 at 333.893 kb on + strand, within LU632_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 331,976 - LU632_RS01675 0.83 +0.3 332,039 - LU632_RS01675 0.85 -0.4 332,039 - LU632_RS01675 0.85 -0.3 332,069 + LU632_RS01675 0.86 +0.4 332,150 + LU632_RS01675 0.89 +0.8 332,151 - LU632_RS01675 0.89 -0.9 332,151 - LU632_RS01675 0.89 -1.4 332,151 - LU632_RS01675 0.89 -0.2 332,162 + LU632_RS01675 0.90 +0.4 332,298 + +0.8 332,454 + -0.1 332,454 + -0.3 332,455 - -0.1 332,455 - -0.1 332,455 - -0.3 332,455 - -0.4 332,455 - +0.0 332,567 - LU632_RS01680 0.70 -0.6 332,567 - LU632_RS01680 0.70 -0.1 332,795 + LU632_RS01685 0.55 -0.2 332,863 - LU632_RS01685 0.77 +1.1 332,870 + LU632_RS01685 0.79 +1.3 332,871 - LU632_RS01685 0.79 +0.7 332,974 + +0.3 332,974 + -0.5 333,012 - -0.5 333,029 + -1.5 333,049 + LU632_RS01690 0.12 +0.3 333,098 + LU632_RS01690 0.22 +0.4 333,099 - LU632_RS01690 0.22 +0.1 333,106 + LU632_RS01690 0.23 +0.1 333,106 + LU632_RS01690 0.23 -0.5 333,107 - LU632_RS01690 0.24 -0.7 333,109 + LU632_RS01690 0.24 +0.4 333,109 + LU632_RS01690 0.24 -1.4 333,109 + LU632_RS01690 0.24 -0.5 333,109 + LU632_RS01690 0.24 +0.2 333,110 - LU632_RS01690 0.24 -0.6 333,110 - LU632_RS01690 0.24 +0.2 333,229 + LU632_RS01690 0.47 +0.2 333,229 + LU632_RS01690 0.47 -1.0 333,229 + LU632_RS01690 0.47 +1.4 333,229 + LU632_RS01690 0.47 -1.2 333,230 - LU632_RS01690 0.47 +0.5 333,232 + LU632_RS01690 0.48 -0.1 333,233 - LU632_RS01690 0.48 +0.4 333,277 + LU632_RS01690 0.57 +0.0 333,278 - LU632_RS01690 0.57 -0.1 333,354 + LU632_RS01690 0.72 -0.4 333,444 - LU632_RS01690 0.89 +0.3 333,502 + -0.3 333,502 + -0.5 333,503 - -0.3 333,503 - -2.4 333,503 - +0.6 333,503 - -0.2 333,503 - -0.3 333,538 + +0.4 333,595 + +0.6 333,595 + +0.1 333,595 + +1.2 333,595 + +0.3 333,596 - -1.0 333,596 - +0.3 333,596 - -0.5 333,596 - +1.5 333,599 + -0.1 333,599 + +0.5 333,762 - LU632_RS01695 0.22 -0.4 333,762 - LU632_RS01695 0.22 +0.2 333,821 + LU632_RS01695 0.27 -0.5 333,823 + LU632_RS01695 0.27 -0.7 333,839 - LU632_RS01695 0.29 +0.1 333,839 - LU632_RS01695 0.29 -0.5 333,839 - LU632_RS01695 0.29 -0.3 333,839 - LU632_RS01695 0.29 +0.4 333,893 + LU632_RS01695 0.33 +1.2
Or see this region's nucleotide sequence