Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00835 and zinT are separated by 76 nucleotides zinT and LU632_RS00845 are separated by 181 nucleotides LU632_RS00845 and LU632_RS00850 overlap by 4 nucleotides
LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664
_RS00835
LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388
zinT
LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403
_RS00845
LU632_RS00850: LU632_RS00850 - GNAT family N-acetyltransferase, at 185,400 to 186,524
_RS00850
Position (kb) 183
184
185
186 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.577 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.617 kb on + strand at 182.692 kb on + strand at 182.692 kb on + strand at 182.910 kb on + strand, within zinT at 182.911 kb on - strand, within zinT at 182.979 kb on + strand, within zinT at 182.979 kb on - strand, within zinT at 182.980 kb on - strand, within zinT at 183.003 kb on + strand, within zinT at 183.004 kb on - strand, within zinT at 183.004 kb on - strand, within zinT at 183.010 kb on - strand, within zinT at 183.068 kb on - strand, within zinT at 183.074 kb on - strand, within zinT at 183.102 kb on + strand, within zinT at 183.102 kb on + strand, within zinT at 183.106 kb on - strand, within zinT at 183.182 kb on + strand, within zinT at 183.183 kb on - strand, within zinT at 183.187 kb on - strand, within zinT at 183.193 kb on + strand, within zinT at 183.449 kb on + strand at 183.451 kb on + strand at 183.452 kb on - strand at 183.504 kb on + strand at 183.637 kb on - strand at 183.656 kb on - strand at 183.665 kb on - strand at 183.698 kb on + strand at 183.698 kb on + strand at 183.728 kb on + strand at 183.729 kb on - strand at 183.729 kb on - strand at 183.734 kb on + strand at 183.774 kb on - strand, within LU632_RS00845 at 183.938 kb on + strand, within LU632_RS00845 at 183.939 kb on - strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.942 kb on + strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 183.943 kb on - strand, within LU632_RS00845 at 184.078 kb on - strand, within LU632_RS00845 at 184.086 kb on - strand, within LU632_RS00845 at 184.093 kb on + strand, within LU632_RS00845 at 184.094 kb on - strand, within LU632_RS00845 at 184.094 kb on - strand, within LU632_RS00845 at 184.180 kb on + strand, within LU632_RS00845 at 184.181 kb on - strand, within LU632_RS00845 at 184.189 kb on + strand, within LU632_RS00845 at 184.309 kb on - strand, within LU632_RS00845 at 184.399 kb on - strand, within LU632_RS00845 at 184.526 kb on + strand, within LU632_RS00845 at 184.526 kb on + strand, within LU632_RS00845 at 184.579 kb on + strand, within LU632_RS00845 at 184.680 kb on - strand, within LU632_RS00845 at 184.802 kb on + strand, within LU632_RS00845 at 184.803 kb on - strand, within LU632_RS00845 at 184.803 kb on - strand, within LU632_RS00845 at 184.855 kb on - strand, within LU632_RS00845 at 184.855 kb on - strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.896 kb on + strand, within LU632_RS00845 at 184.897 kb on - strand, within LU632_RS00845 at 184.901 kb on + strand, within LU632_RS00845 at 184.912 kb on + strand, within LU632_RS00845 at 184.912 kb on + strand, within LU632_RS00845 at 184.913 kb on - strand, within LU632_RS00845 at 184.913 kb on - strand, within LU632_RS00845 at 184.941 kb on + strand, within LU632_RS00845 at 184.942 kb on - strand, within LU632_RS00845 at 184.942 kb on - strand, within LU632_RS00845 at 185.103 kb on - strand, within LU632_RS00845 at 185.103 kb on - strand, within LU632_RS00845 at 185.226 kb on - strand at 185.354 kb on - strand at 185.354 kb on - strand at 185.354 kb on - strand at 185.824 kb on + strand, within LU632_RS00850 at 185.842 kb on + strand, within LU632_RS00850 at 185.842 kb on + strand, within LU632_RS00850 at 185.863 kb on + strand, within LU632_RS00850 at 185.964 kb on - strand, within LU632_RS00850 at 185.969 kb on + strand, within LU632_RS00850 at 186.189 kb on + strand, within LU632_RS00850 at 186.190 kb on - strand, within LU632_RS00850 at 186.242 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850 at 186.296 kb on - strand, within LU632_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 182,577 + LU632_RS00835 0.89 -0.1 182,577 + LU632_RS00835 0.89 -0.1 182,617 + +0.1 182,692 + -0.5 182,692 + -0.6 182,910 + zinT LU632_RS00840 0.26 +0.3 182,911 - zinT LU632_RS00840 0.26 -0.7 182,979 + zinT LU632_RS00840 0.37 -0.4 182,979 - zinT LU632_RS00840 0.37 +0.0 182,980 - zinT LU632_RS00840 0.37 +0.3 183,003 + zinT LU632_RS00840 0.40 +0.5 183,004 - zinT LU632_RS00840 0.41 +1.0 183,004 - zinT LU632_RS00840 0.41 +0.4 183,010 - zinT LU632_RS00840 0.42 +0.7 183,068 - zinT LU632_RS00840 0.50 +0.1 183,074 - zinT LU632_RS00840 0.51 -0.5 183,102 + zinT LU632_RS00840 0.56 -0.1 183,102 + zinT LU632_RS00840 0.56 -0.8 183,106 - zinT LU632_RS00840 0.56 -0.3 183,182 + zinT LU632_RS00840 0.68 +0.5 183,183 - zinT LU632_RS00840 0.68 +0.3 183,187 - zinT LU632_RS00840 0.69 -0.4 183,193 + zinT LU632_RS00840 0.70 +2.2 183,449 + +0.1 183,451 + -0.8 183,452 - -0.7 183,504 + -0.7 183,637 - +0.3 183,656 - -0.1 183,665 - -0.9 183,698 + -0.2 183,698 + +0.4 183,728 + +0.2 183,729 - -0.3 183,729 - +0.0 183,734 + +0.1 183,774 - LU632_RS00845 0.11 -0.2 183,938 + LU632_RS00845 0.20 +0.6 183,939 - LU632_RS00845 0.20 -0.1 183,942 + LU632_RS00845 0.20 +0.4 183,942 + LU632_RS00845 0.20 -0.4 183,942 + LU632_RS00845 0.20 -0.3 183,942 + LU632_RS00845 0.20 +0.0 183,943 - LU632_RS00845 0.20 +0.1 183,943 - LU632_RS00845 0.20 +0.2 183,943 - LU632_RS00845 0.20 -0.2 183,943 - LU632_RS00845 0.20 -0.6 183,943 - LU632_RS00845 0.20 -1.1 184,078 - LU632_RS00845 0.28 -0.3 184,086 - LU632_RS00845 0.28 +1.2 184,093 + LU632_RS00845 0.29 -0.1 184,094 - LU632_RS00845 0.29 +1.5 184,094 - LU632_RS00845 0.29 +0.3 184,180 + LU632_RS00845 0.33 +0.5 184,181 - LU632_RS00845 0.33 +0.1 184,189 + LU632_RS00845 0.34 -0.4 184,309 - LU632_RS00845 0.40 -0.5 184,399 - LU632_RS00845 0.45 +1.5 184,526 + LU632_RS00845 0.52 -0.9 184,526 + LU632_RS00845 0.52 +0.5 184,579 + LU632_RS00845 0.55 -0.5 184,680 - LU632_RS00845 0.61 -0.5 184,802 + LU632_RS00845 0.67 -0.2 184,803 - LU632_RS00845 0.67 -0.2 184,803 - LU632_RS00845 0.67 +0.1 184,855 - LU632_RS00845 0.70 -0.6 184,855 - LU632_RS00845 0.70 -0.1 184,896 + LU632_RS00845 0.72 +0.5 184,896 + LU632_RS00845 0.72 +0.1 184,896 + LU632_RS00845 0.72 -0.0 184,896 + LU632_RS00845 0.72 +1.3 184,897 - LU632_RS00845 0.72 +0.0 184,901 + LU632_RS00845 0.73 +1.9 184,912 + LU632_RS00845 0.73 +0.0 184,912 + LU632_RS00845 0.73 +0.5 184,913 - LU632_RS00845 0.73 -1.1 184,913 - LU632_RS00845 0.73 -2.2 184,941 + LU632_RS00845 0.75 -0.2 184,942 - LU632_RS00845 0.75 +0.3 184,942 - LU632_RS00845 0.75 +0.9 185,103 - LU632_RS00845 0.84 -0.2 185,103 - LU632_RS00845 0.84 +0.4 185,226 - +0.5 185,354 - +0.4 185,354 - -0.3 185,354 - +0.1 185,824 + LU632_RS00850 0.38 +0.4 185,842 + LU632_RS00850 0.39 +0.9 185,842 + LU632_RS00850 0.39 +0.4 185,863 + LU632_RS00850 0.41 +0.1 185,964 - LU632_RS00850 0.50 +1.4 185,969 + LU632_RS00850 0.51 -0.2 186,189 + LU632_RS00850 0.70 -0.6 186,190 - LU632_RS00850 0.70 -0.2 186,242 - LU632_RS00850 0.75 -0.8 186,296 - LU632_RS00850 0.80 +0.1 186,296 - LU632_RS00850 0.80 -0.6 186,296 - LU632_RS00850 0.80 +0.3
Or see this region's nucleotide sequence