Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00830 and LU632_RS00835 are separated by 193 nucleotides LU632_RS00835 and zinT are separated by 76 nucleotides zinT and LU632_RS00845 are separated by 181 nucleotides
LU632_RS00830: LU632_RS00830 - SIS domain-containing protein, at 180,669 to 181,694
_RS00830
LU632_RS00835: LU632_RS00835 - DeoR/GlpR family DNA-binding transcription regulator, at 181,888 to 182,664
_RS00835
LU632_RS00840: zinT - metal-binding protein ZinT, at 182,741 to 183,388
zinT
LU632_RS00845: LU632_RS00845 - ABC transporter ATP-binding protein/permease, at 183,570 to 185,403
_RS00845
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 181.069 kb on - strand, within LU632_RS00830 at 181.137 kb on + strand, within LU632_RS00830 at 181.140 kb on - strand, within LU632_RS00830 at 181.143 kb on - strand, within LU632_RS00830 at 181.183 kb on + strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.184 kb on - strand, within LU632_RS00830 at 181.185 kb on + strand, within LU632_RS00830 at 181.186 kb on - strand, within LU632_RS00830 at 181.225 kb on + strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.226 kb on - strand, within LU632_RS00830 at 181.241 kb on + strand, within LU632_RS00830 at 181.334 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.370 kb on + strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.495 kb on - strand, within LU632_RS00830 at 181.563 kb on + strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.564 kb on - strand, within LU632_RS00830 at 181.617 kb on - strand at 181.617 kb on - strand at 181.618 kb on + strand at 181.618 kb on + strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.619 kb on - strand at 181.824 kb on + strand at 181.844 kb on + strand at 181.955 kb on + strand at 181.956 kb on - strand at 182.012 kb on + strand, within LU632_RS00835 at 182.054 kb on + strand, within LU632_RS00835 at 182.055 kb on - strand, within LU632_RS00835 at 182.081 kb on - strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.095 kb on + strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.096 kb on - strand, within LU632_RS00835 at 182.116 kb on - strand, within LU632_RS00835 at 182.250 kb on - strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.322 kb on + strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.323 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.339 kb on - strand, within LU632_RS00835 at 182.367 kb on + strand, within LU632_RS00835 at 182.417 kb on + strand, within LU632_RS00835 at 182.448 kb on + strand, within LU632_RS00835 at 182.493 kb on + strand, within LU632_RS00835 at 182.565 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.577 kb on + strand, within LU632_RS00835 at 182.617 kb on + strand at 182.692 kb on + strand at 182.692 kb on + strand at 182.910 kb on + strand, within zinT at 182.911 kb on - strand, within zinT at 182.979 kb on + strand, within zinT at 182.979 kb on - strand, within zinT at 182.980 kb on - strand, within zinT at 183.003 kb on + strand, within zinT at 183.004 kb on - strand, within zinT at 183.004 kb on - strand, within zinT at 183.010 kb on - strand, within zinT at 183.068 kb on - strand, within zinT at 183.074 kb on - strand, within zinT at 183.102 kb on + strand, within zinT at 183.102 kb on + strand, within zinT at 183.106 kb on - strand, within zinT at 183.182 kb on + strand, within zinT at 183.183 kb on - strand, within zinT at 183.187 kb on - strand, within zinT at 183.193 kb on + strand, within zinT at 183.449 kb on + strand at 183.451 kb on + strand at 183.452 kb on - strand at 183.504 kb on + strand at 183.637 kb on - strand at 183.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 181,069 - LU632_RS00830 0.39 +0.1 181,137 + LU632_RS00830 0.46 +1.2 181,140 - LU632_RS00830 0.46 -0.2 181,143 - LU632_RS00830 0.46 +0.4 181,183 + LU632_RS00830 0.50 -0.9 181,184 - LU632_RS00830 0.50 -0.4 181,184 - LU632_RS00830 0.50 -0.2 181,184 - LU632_RS00830 0.50 -0.4 181,184 - LU632_RS00830 0.50 +0.4 181,185 + LU632_RS00830 0.50 +0.9 181,186 - LU632_RS00830 0.50 +0.2 181,225 + LU632_RS00830 0.54 -0.7 181,226 - LU632_RS00830 0.54 +0.6 181,226 - LU632_RS00830 0.54 +0.6 181,241 + LU632_RS00830 0.56 +1.5 181,334 + LU632_RS00830 0.65 +0.3 181,370 + LU632_RS00830 0.68 +0.7 181,370 + LU632_RS00830 0.68 -0.5 181,495 - LU632_RS00830 0.81 -1.1 181,495 - LU632_RS00830 0.81 -0.3 181,563 + LU632_RS00830 0.87 +0.5 181,564 - LU632_RS00830 0.87 -0.4 181,564 - LU632_RS00830 0.87 +0.9 181,617 - +0.1 181,617 - +0.2 181,618 + -0.2 181,618 + -0.1 181,619 - +1.2 181,619 - +0.1 181,619 - +0.1 181,619 - +0.5 181,824 + -0.7 181,844 + -1.2 181,955 + -0.3 181,956 - -0.0 182,012 + LU632_RS00835 0.16 -0.6 182,054 + LU632_RS00835 0.21 -0.8 182,055 - LU632_RS00835 0.21 -0.7 182,081 - LU632_RS00835 0.25 -0.7 182,095 + LU632_RS00835 0.27 -0.7 182,095 + LU632_RS00835 0.27 -0.6 182,095 + LU632_RS00835 0.27 +0.5 182,096 - LU632_RS00835 0.27 +0.9 182,096 - LU632_RS00835 0.27 -0.1 182,116 - LU632_RS00835 0.29 +0.9 182,250 - LU632_RS00835 0.47 -0.7 182,322 + LU632_RS00835 0.56 -0.7 182,322 + LU632_RS00835 0.56 -0.6 182,322 + LU632_RS00835 0.56 -0.7 182,323 - LU632_RS00835 0.56 -1.9 182,323 - LU632_RS00835 0.56 +0.2 182,323 - LU632_RS00835 0.56 -0.0 182,323 - LU632_RS00835 0.56 -0.1 182,339 - LU632_RS00835 0.58 -0.4 182,339 - LU632_RS00835 0.58 -0.7 182,339 - LU632_RS00835 0.58 -0.1 182,367 + LU632_RS00835 0.62 -0.1 182,417 + LU632_RS00835 0.68 -0.5 182,448 + LU632_RS00835 0.72 -0.6 182,493 + LU632_RS00835 0.78 -0.7 182,565 + LU632_RS00835 0.87 -0.9 182,577 + LU632_RS00835 0.89 -0.1 182,577 + LU632_RS00835 0.89 -0.1 182,617 + +0.1 182,692 + -0.5 182,692 + -0.6 182,910 + zinT LU632_RS00840 0.26 +0.3 182,911 - zinT LU632_RS00840 0.26 -0.7 182,979 + zinT LU632_RS00840 0.37 -0.4 182,979 - zinT LU632_RS00840 0.37 +0.0 182,980 - zinT LU632_RS00840 0.37 +0.3 183,003 + zinT LU632_RS00840 0.40 +0.5 183,004 - zinT LU632_RS00840 0.41 +1.0 183,004 - zinT LU632_RS00840 0.41 +0.4 183,010 - zinT LU632_RS00840 0.42 +0.7 183,068 - zinT LU632_RS00840 0.50 +0.1 183,074 - zinT LU632_RS00840 0.51 -0.5 183,102 + zinT LU632_RS00840 0.56 -0.1 183,102 + zinT LU632_RS00840 0.56 -0.8 183,106 - zinT LU632_RS00840 0.56 -0.3 183,182 + zinT LU632_RS00840 0.68 +0.5 183,183 - zinT LU632_RS00840 0.68 +0.3 183,187 - zinT LU632_RS00840 0.69 -0.4 183,193 + zinT LU632_RS00840 0.70 +2.2 183,449 + +0.1 183,451 + -0.8 183,452 - -0.7 183,504 + -0.7 183,637 - +0.3 183,656 - -0.1
Or see this region's nucleotide sequence