Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssC and LU632_RS00720 are separated by 151 nucleotides LU632_RS00720 and tssJ are separated by 130 nucleotides tssJ and tssK are separated by 3 nucleotides
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
LU632_RS00730: tssK - type VI secretion system baseplate subunit TssK, at 153,605 to 154,951
tssK
Position (kb) 152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.459 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.556 kb on + strand, within tssC at 151.575 kb on - strand, within tssC at 151.607 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.615 kb on - strand, within tssC at 151.615 kb on - strand, within tssC at 151.730 kb on - strand, within tssC at 151.740 kb on - strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.963 kb on - strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 152.003 kb on + strand, within tssC at 152.031 kb on - strand, within tssC at 152.079 kb on + strand, within tssC at 152.079 kb on + strand, within tssC at 152.080 kb on - strand, within tssC at 152.084 kb on - strand, within tssC at 152.165 kb on - strand at 152.165 kb on - strand at 152.165 kb on - strand at 152.184 kb on + strand at 152.184 kb on + strand at 152.243 kb on - strand at 152.246 kb on + strand at 152.247 kb on - strand at 152.278 kb on + strand at 152.344 kb on + strand at 152.344 kb on + strand at 152.345 kb on - strand at 152.412 kb on - strand at 152.448 kb on + strand at 152.554 kb on - strand, within LU632_RS00720 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ at 153.319 kb on + strand, within tssJ at 153.322 kb on + strand, within tssJ at 153.617 kb on - strand at 153.678 kb on - strand at 153.744 kb on - strand, within tssK at 153.750 kb on + strand, within tssK at 153.866 kb on - strand, within tssK at 153.882 kb on + strand, within tssK at 153.882 kb on + strand, within tssK
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 151,459 - tssC LU632_RS00715 0.45 +1.7 151,548 - tssC LU632_RS00715 0.51 -0.2 151,548 - tssC LU632_RS00715 0.51 -0.7 151,556 + tssC LU632_RS00715 0.51 -0.1 151,575 - tssC LU632_RS00715 0.53 -0.7 151,607 + tssC LU632_RS00715 0.55 +0.7 151,614 + tssC LU632_RS00715 0.55 +0.2 151,614 + tssC LU632_RS00715 0.55 -0.4 151,615 - tssC LU632_RS00715 0.55 -0.9 151,615 - tssC LU632_RS00715 0.55 -0.1 151,730 - tssC LU632_RS00715 0.63 -0.2 151,740 - tssC LU632_RS00715 0.64 +0.0 151,962 + tssC LU632_RS00715 0.78 -0.5 151,962 + tssC LU632_RS00715 0.78 -0.4 151,962 + tssC LU632_RS00715 0.78 +0.5 151,963 - tssC LU632_RS00715 0.78 -1.3 151,964 + tssC LU632_RS00715 0.79 -0.8 151,964 + tssC LU632_RS00715 0.79 -0.3 151,964 + tssC LU632_RS00715 0.79 -0.2 151,964 + tssC LU632_RS00715 0.79 +0.5 151,965 - tssC LU632_RS00715 0.79 -0.3 151,965 - tssC LU632_RS00715 0.79 +0.1 151,965 - tssC LU632_RS00715 0.79 +0.1 152,003 + tssC LU632_RS00715 0.81 +0.0 152,031 - tssC LU632_RS00715 0.83 +1.7 152,079 + tssC LU632_RS00715 0.86 +0.4 152,079 + tssC LU632_RS00715 0.86 +0.9 152,080 - tssC LU632_RS00715 0.86 +0.3 152,084 - tssC LU632_RS00715 0.87 -2.4 152,165 - -0.1 152,165 - +0.1 152,165 - -0.2 152,184 + -1.5 152,184 + +0.4 152,243 - +1.3 152,246 + -0.8 152,247 - +0.6 152,278 + -0.4 152,344 + -0.1 152,344 + -0.7 152,345 - +1.4 152,412 - +0.7 152,448 + +0.7 152,554 - LU632_RS00720 0.24 +0.4 152,605 - LU632_RS00720 0.35 -1.3 152,645 + LU632_RS00720 0.43 -0.9 152,645 + LU632_RS00720 0.43 +2.3 152,651 - LU632_RS00720 0.44 -0.1 152,671 - LU632_RS00720 0.48 +0.6 152,893 + -0.1 153,106 - -0.1 153,224 - tssJ LU632_RS00725 0.31 +1.7 153,249 + tssJ LU632_RS00725 0.36 +0.5 153,250 - tssJ LU632_RS00725 0.36 +0.2 153,319 + tssJ LU632_RS00725 0.48 +0.2 153,322 + tssJ LU632_RS00725 0.49 +0.5 153,617 - -0.7 153,678 - -0.1 153,744 - tssK LU632_RS00730 0.10 -1.1 153,750 + tssK LU632_RS00730 0.11 +0.4 153,866 - tssK LU632_RS00730 0.19 -0.4 153,882 + tssK LU632_RS00730 0.21 +0.3 153,882 + tssK LU632_RS00730 0.21 -0.2
Or see this region's nucleotide sequence