Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00620 and LU632_RS00625 are separated by 22 nucleotides LU632_RS00625 and adhP are separated by 323 nucleotides
LU632_RS00620: LU632_RS00620 - glycoside hydrolase family 88 protein, at 126,554 to 127,693
_RS00620
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
LU632_RS00630: adhP - alcohol dehydrogenase AdhP, at 129,644 to 130,657
adhP
Position (kb) 127
128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.750 kb on + strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.751 kb on - strand, within LU632_RS00620 at 126.766 kb on - strand, within LU632_RS00620 at 126.829 kb on - strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 127.085 kb on + strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.113 kb on + strand, within LU632_RS00620 at 127.131 kb on + strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.462 kb on - strand, within LU632_RS00620 at 127.464 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.474 kb on + strand, within LU632_RS00620 at 127.475 kb on - strand, within LU632_RS00620 at 127.606 kb on + strand at 127.612 kb on + strand at 127.676 kb on + strand at 127.683 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.702 kb on - strand at 127.827 kb on - strand at 127.983 kb on - strand, within LU632_RS00625 at 127.998 kb on - strand, within LU632_RS00625 at 128.055 kb on - strand, within LU632_RS00625 at 128.168 kb on + strand, within LU632_RS00625 at 128.181 kb on + strand, within LU632_RS00625 at 128.227 kb on - strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.236 kb on + strand, within LU632_RS00625 at 128.237 kb on - strand, within LU632_RS00625 at 128.240 kb on + strand, within LU632_RS00625 at 128.241 kb on - strand, within LU632_RS00625 at 128.254 kb on + strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.333 kb on - strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.374 kb on - strand, within LU632_RS00625 at 128.414 kb on + strand, within LU632_RS00625 at 128.415 kb on - strand, within LU632_RS00625 at 128.451 kb on + strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.505 kb on + strand, within LU632_RS00625 at 128.506 kb on - strand, within LU632_RS00625 at 128.511 kb on + strand, within LU632_RS00625 at 128.519 kb on - strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.522 kb on - strand, within LU632_RS00625 at 128.526 kb on - strand, within LU632_RS00625 at 128.556 kb on - strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.601 kb on - strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.627 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.638 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.809 kb on + strand, within LU632_RS00625 at 128.925 kb on + strand, within LU632_RS00625 at 128.926 kb on - strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.978 kb on - strand, within LU632_RS00625 at 128.989 kb on + strand, within LU632_RS00625 at 128.990 kb on - strand, within LU632_RS00625 at 128.992 kb on + strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 129.006 kb on - strand, within LU632_RS00625 at 129.008 kb on + strand, within LU632_RS00625 at 129.028 kb on + strand, within LU632_RS00625 at 129.032 kb on + strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.121 kb on + strand, within LU632_RS00625 at 129.214 kb on + strand at 129.290 kb on - strand at 129.309 kb on - strand at 129.320 kb on + strand at 129.336 kb on + strand at 129.345 kb on + strand at 129.346 kb on - strand at 129.360 kb on - strand at 129.383 kb on - strand at 129.383 kb on - strand at 129.604 kb on + strand at 129.604 kb on + strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.620 kb on - strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.806 kb on - strand, within adhP at 129.807 kb on + strand, within adhP at 129.948 kb on + strand, within adhP at 130.006 kb on + strand, within adhP at 130.007 kb on - strand, within adhP at 130.095 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.165 kb on + strand, within adhP at 130.181 kb on + strand, within adhP at 130.225 kb on + strand, within adhP at 130.226 kb on - strand, within adhP at 130.226 kb on - strand, within adhP at 130.275 kb on + strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 126,750 + LU632_RS00620 0.17 -0.8 126,750 + LU632_RS00620 0.17 -2.4 126,751 - LU632_RS00620 0.17 -0.3 126,766 - LU632_RS00620 0.19 -0.4 126,829 - LU632_RS00620 0.24 +0.1 126,997 + LU632_RS00620 0.39 -0.9 126,997 + LU632_RS00620 0.39 +0.3 127,085 + LU632_RS00620 0.47 +0.2 127,086 - LU632_RS00620 0.47 +0.2 127,086 - LU632_RS00620 0.47 -0.1 127,113 + LU632_RS00620 0.49 +0.2 127,131 + LU632_RS00620 0.51 +0.9 127,132 - LU632_RS00620 0.51 -0.7 127,132 - LU632_RS00620 0.51 +0.1 127,462 - LU632_RS00620 0.80 -0.7 127,464 + LU632_RS00620 0.80 +0.9 127,470 + LU632_RS00620 0.80 -0.1 127,470 + LU632_RS00620 0.80 +0.5 127,470 + LU632_RS00620 0.80 +0.5 127,470 + LU632_RS00620 0.80 -1.1 127,470 + LU632_RS00620 0.80 +0.2 127,470 + LU632_RS00620 0.80 +0.5 127,471 - LU632_RS00620 0.80 +0.5 127,471 - LU632_RS00620 0.80 -0.0 127,474 + LU632_RS00620 0.81 +0.5 127,475 - LU632_RS00620 0.81 -0.2 127,606 + +1.2 127,612 + +0.1 127,676 + -0.3 127,683 + -0.8 127,685 + -0.4 127,685 + -2.5 127,685 + -0.0 127,686 - +0.2 127,686 - +0.0 127,686 - +0.3 127,702 - +0.3 127,827 - +0.5 127,983 - LU632_RS00625 0.17 -0.6 127,998 - LU632_RS00625 0.18 +1.3 128,055 - LU632_RS00625 0.21 +0.5 128,168 + LU632_RS00625 0.28 -0.3 128,181 + LU632_RS00625 0.29 -0.2 128,227 - LU632_RS00625 0.32 +1.7 128,230 + LU632_RS00625 0.32 +0.6 128,230 + LU632_RS00625 0.32 +0.7 128,230 + LU632_RS00625 0.32 +0.2 128,230 + LU632_RS00625 0.32 +0.9 128,230 + LU632_RS00625 0.32 +0.8 128,230 + LU632_RS00625 0.32 -0.1 128,230 + LU632_RS00625 0.32 -0.9 128,230 + LU632_RS00625 0.32 +0.0 128,231 - LU632_RS00625 0.32 +1.0 128,231 - LU632_RS00625 0.32 +0.6 128,231 - LU632_RS00625 0.32 -0.9 128,231 - LU632_RS00625 0.32 +0.9 128,231 - LU632_RS00625 0.32 -1.1 128,236 + LU632_RS00625 0.32 +0.3 128,237 - LU632_RS00625 0.32 +0.1 128,240 + LU632_RS00625 0.33 +1.8 128,241 - LU632_RS00625 0.33 +0.1 128,254 + LU632_RS00625 0.34 -0.6 128,255 - LU632_RS00625 0.34 +0.6 128,255 - LU632_RS00625 0.34 +0.5 128,255 - LU632_RS00625 0.34 -0.3 128,255 - LU632_RS00625 0.34 +0.6 128,258 + LU632_RS00625 0.34 +0.1 128,258 + LU632_RS00625 0.34 +0.6 128,259 - LU632_RS00625 0.34 -0.1 128,259 - LU632_RS00625 0.34 +0.1 128,259 - LU632_RS00625 0.34 -0.3 128,333 - LU632_RS00625 0.38 -0.4 128,347 + LU632_RS00625 0.39 -0.8 128,347 + LU632_RS00625 0.39 -0.4 128,374 - LU632_RS00625 0.41 +0.4 128,414 + LU632_RS00625 0.43 -0.5 128,415 - LU632_RS00625 0.44 +1.8 128,451 + LU632_RS00625 0.46 +0.3 128,452 - LU632_RS00625 0.46 -0.1 128,452 - LU632_RS00625 0.46 +0.1 128,505 + LU632_RS00625 0.49 -0.1 128,506 - LU632_RS00625 0.49 +0.1 128,511 + LU632_RS00625 0.50 +1.5 128,519 - LU632_RS00625 0.50 +1.1 128,521 + LU632_RS00625 0.50 -0.6 128,521 + LU632_RS00625 0.50 -0.1 128,522 - LU632_RS00625 0.50 +0.2 128,526 - LU632_RS00625 0.50 -0.4 128,556 - LU632_RS00625 0.52 -0.3 128,557 + LU632_RS00625 0.52 +1.9 128,557 + LU632_RS00625 0.52 +1.1 128,557 + LU632_RS00625 0.52 -1.1 128,557 + LU632_RS00625 0.52 -0.0 128,558 - LU632_RS00625 0.52 +1.0 128,558 - LU632_RS00625 0.52 -1.0 128,569 + LU632_RS00625 0.53 -0.1 128,569 + LU632_RS00625 0.53 -0.4 128,570 - LU632_RS00625 0.53 +0.1 128,570 - LU632_RS00625 0.53 +0.6 128,600 + LU632_RS00625 0.55 -0.1 128,600 + LU632_RS00625 0.55 +0.5 128,601 - LU632_RS00625 0.55 -0.7 128,604 + LU632_RS00625 0.55 -0.6 128,604 + LU632_RS00625 0.55 +0.7 128,604 + LU632_RS00625 0.55 +0.1 128,605 - LU632_RS00625 0.55 +1.7 128,605 - LU632_RS00625 0.55 -0.1 128,627 + LU632_RS00625 0.57 +0.8 128,637 + LU632_RS00625 0.57 -1.1 128,637 + LU632_RS00625 0.57 -0.1 128,638 - LU632_RS00625 0.57 +1.2 128,752 - LU632_RS00625 0.65 +1.5 128,752 - LU632_RS00625 0.65 -0.5 128,754 - LU632_RS00625 0.65 -0.2 128,754 - LU632_RS00625 0.65 +0.4 128,809 + LU632_RS00625 0.68 -0.4 128,925 + LU632_RS00625 0.75 +0.5 128,926 - LU632_RS00625 0.75 -0.0 128,977 + LU632_RS00625 0.79 +0.4 128,977 + LU632_RS00625 0.79 +1.1 128,978 - LU632_RS00625 0.79 -0.1 128,989 + LU632_RS00625 0.79 +0.5 128,990 - LU632_RS00625 0.79 -0.3 128,992 + LU632_RS00625 0.80 +0.3 128,993 - LU632_RS00625 0.80 -2.3 128,993 - LU632_RS00625 0.80 +0.1 128,993 - LU632_RS00625 0.80 -0.9 128,998 + LU632_RS00625 0.80 -0.3 128,998 + LU632_RS00625 0.80 -1.1 128,998 + LU632_RS00625 0.80 -0.2 128,998 + LU632_RS00625 0.80 -0.1 128,998 + LU632_RS00625 0.80 +0.3 128,999 - LU632_RS00625 0.80 -0.1 128,999 - LU632_RS00625 0.80 +0.9 128,999 - LU632_RS00625 0.80 -0.3 128,999 - LU632_RS00625 0.80 -0.3 129,006 - LU632_RS00625 0.80 -0.2 129,008 + LU632_RS00625 0.80 -0.5 129,028 + LU632_RS00625 0.82 -0.1 129,032 + LU632_RS00625 0.82 +0.7 129,033 - LU632_RS00625 0.82 -0.2 129,033 - LU632_RS00625 0.82 +0.4 129,036 + LU632_RS00625 0.82 +0.6 129,036 + LU632_RS00625 0.82 +0.0 129,121 + LU632_RS00625 0.88 +0.9 129,214 + +0.2 129,290 - -0.1 129,309 - +0.7 129,320 + +0.3 129,336 + +0.7 129,345 + +1.4 129,346 - +0.4 129,360 - +0.6 129,383 - -1.9 129,383 - +0.4 129,604 + +0.1 129,604 + +0.6 129,605 - -1.1 129,605 - -0.6 129,617 + +1.6 129,617 + +0.3 129,617 + +0.2 129,618 - -1.2 129,618 - +0.1 129,618 - +0.5 129,619 + +0.5 129,619 + -0.2 129,619 + +0.2 129,619 + -1.7 129,620 - -1.0 129,621 + +0.6 129,621 + -0.9 129,621 + -1.1 129,621 + +0.9 129,621 + +1.3 129,806 - adhP LU632_RS00630 0.16 -0.7 129,807 + adhP LU632_RS00630 0.16 -0.2 129,948 + adhP LU632_RS00630 0.30 -2.6 130,006 + adhP LU632_RS00630 0.36 -1.7 130,007 - adhP LU632_RS00630 0.36 -0.4 130,095 - adhP LU632_RS00630 0.44 -0.4 130,146 - adhP LU632_RS00630 0.50 -0.1 130,146 - adhP LU632_RS00630 0.50 -1.8 130,165 + adhP LU632_RS00630 0.51 -1.4 130,181 + adhP LU632_RS00630 0.53 -1.1 130,225 + adhP LU632_RS00630 0.57 -1.5 130,226 - adhP LU632_RS00630 0.57 +0.3 130,226 - adhP LU632_RS00630 0.57 -0.5 130,275 + adhP LU632_RS00630 0.62 -0.7
Or see this region's nucleotide sequence