Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24705 and LU632_RS24710 overlap by 1 nucleotides LU632_RS24710 and LU632_RS24715 are separated by 101 nucleotides LU632_RS24715 and LU632_RS24720 are separated by 73 nucleotides
LU632_RS24705: LU632_RS24705 - hypothetical protein, at 4,706,128 to 4,707,396
_RS24705
LU632_RS24710: LU632_RS24710 - TcfC E-set like domain-containing protein, at 4,707,396 to 4,709,786
_RS24710
LU632_RS24715: LU632_RS24715 - CS1 type fimbrial major subunit, at 4,709,888 to 4,710,415
_RS24715
LU632_RS24720: LU632_RS24720 - hypothetical protein, at 4,710,489 to 4,711,262
_RS24720
Position (kb) 4707
4708
4709
4710 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4706.704 kb on + strand, within LU632_RS24705 at 4706.704 kb on + strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.705 kb on - strand, within LU632_RS24705 at 4706.735 kb on - strand, within LU632_RS24705 at 4706.737 kb on - strand, within LU632_RS24705 at 4706.799 kb on + strand, within LU632_RS24705 at 4706.800 kb on - strand, within LU632_RS24705 at 4706.863 kb on - strand, within LU632_RS24705 at 4706.867 kb on + strand, within LU632_RS24705 at 4706.904 kb on + strand, within LU632_RS24705 at 4706.904 kb on + strand, within LU632_RS24705 at 4706.905 kb on - strand, within LU632_RS24705 at 4706.918 kb on + strand, within LU632_RS24705 at 4706.919 kb on - strand, within LU632_RS24705 at 4706.943 kb on + strand, within LU632_RS24705 at 4707.014 kb on + strand, within LU632_RS24705 at 4707.051 kb on + strand, within LU632_RS24705 at 4707.052 kb on - strand, within LU632_RS24705 at 4707.072 kb on + strand, within LU632_RS24705 at 4707.073 kb on - strand, within LU632_RS24705 at 4707.085 kb on + strand, within LU632_RS24705 at 4707.086 kb on - strand, within LU632_RS24705 at 4707.185 kb on - strand, within LU632_RS24705 at 4707.190 kb on - strand, within LU632_RS24705 at 4707.267 kb on + strand, within LU632_RS24705 at 4707.277 kb on - strand at 4707.470 kb on + strand at 4707.651 kb on + strand, within LU632_RS24710 at 4707.651 kb on + strand, within LU632_RS24710 at 4707.688 kb on + strand, within LU632_RS24710 at 4707.694 kb on - strand, within LU632_RS24710 at 4707.805 kb on + strand, within LU632_RS24710 at 4707.806 kb on + strand, within LU632_RS24710 at 4707.807 kb on - strand, within LU632_RS24710 at 4707.957 kb on + strand, within LU632_RS24710 at 4707.963 kb on + strand, within LU632_RS24710 at 4707.963 kb on + strand, within LU632_RS24710 at 4708.007 kb on + strand, within LU632_RS24710 at 4708.008 kb on - strand, within LU632_RS24710 at 4708.018 kb on - strand, within LU632_RS24710 at 4708.021 kb on + strand, within LU632_RS24710 at 4708.022 kb on - strand, within LU632_RS24710 at 4708.037 kb on + strand, within LU632_RS24710 at 4708.038 kb on - strand, within LU632_RS24710 at 4708.040 kb on - strand, within LU632_RS24710 at 4708.040 kb on - strand, within LU632_RS24710 at 4708.091 kb on - strand, within LU632_RS24710 at 4708.147 kb on + strand, within LU632_RS24710 at 4708.147 kb on + strand, within LU632_RS24710 at 4708.199 kb on + strand, within LU632_RS24710 at 4708.385 kb on + strand, within LU632_RS24710 at 4708.385 kb on + strand, within LU632_RS24710 at 4708.387 kb on + strand, within LU632_RS24710 at 4708.387 kb on + strand, within LU632_RS24710 at 4708.387 kb on + strand, within LU632_RS24710 at 4708.387 kb on + strand, within LU632_RS24710 at 4708.387 kb on + strand, within LU632_RS24710 at 4708.388 kb on - strand, within LU632_RS24710 at 4708.388 kb on - strand, within LU632_RS24710 at 4708.487 kb on - strand, within LU632_RS24710 at 4708.487 kb on - strand, within LU632_RS24710 at 4708.487 kb on - strand, within LU632_RS24710 at 4708.490 kb on + strand, within LU632_RS24710 at 4708.490 kb on + strand, within LU632_RS24710 at 4708.490 kb on + strand, within LU632_RS24710 at 4708.544 kb on + strand, within LU632_RS24710 at 4708.552 kb on + strand, within LU632_RS24710 at 4708.582 kb on + strand, within LU632_RS24710 at 4708.601 kb on + strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.602 kb on - strand, within LU632_RS24710 at 4708.603 kb on + strand, within LU632_RS24710 at 4708.604 kb on - strand, within LU632_RS24710 at 4708.638 kb on - strand, within LU632_RS24710 at 4708.644 kb on - strand, within LU632_RS24710 at 4708.793 kb on - strand, within LU632_RS24710 at 4708.793 kb on - strand, within LU632_RS24710 at 4708.856 kb on - strand, within LU632_RS24710 at 4708.875 kb on - strand, within LU632_RS24710 at 4708.919 kb on - strand, within LU632_RS24710 at 4708.969 kb on - strand, within LU632_RS24710 at 4708.969 kb on - strand, within LU632_RS24710 at 4709.038 kb on + strand, within LU632_RS24710 at 4709.038 kb on + strand, within LU632_RS24710 at 4709.076 kb on - strand, within LU632_RS24710 at 4709.120 kb on - strand, within LU632_RS24710 at 4709.323 kb on - strand, within LU632_RS24710 at 4709.323 kb on - strand, within LU632_RS24710 at 4709.371 kb on + strand, within LU632_RS24710 at 4709.372 kb on - strand, within LU632_RS24710 at 4709.372 kb on - strand, within LU632_RS24710 at 4709.376 kb on - strand, within LU632_RS24710 at 4709.376 kb on - strand, within LU632_RS24710 at 4709.412 kb on - strand, within LU632_RS24710 at 4709.413 kb on + strand, within LU632_RS24710 at 4709.413 kb on + strand, within LU632_RS24710 at 4709.413 kb on + strand, within LU632_RS24710 at 4709.413 kb on + strand, within LU632_RS24710 at 4709.414 kb on - strand, within LU632_RS24710 at 4709.414 kb on - strand, within LU632_RS24710 at 4709.414 kb on - strand, within LU632_RS24710 at 4709.414 kb on - strand, within LU632_RS24710 at 4709.414 kb on - strand, within LU632_RS24710 at 4709.471 kb on + strand, within LU632_RS24710 at 4709.519 kb on + strand, within LU632_RS24710 at 4709.550 kb on + strand at 4709.550 kb on + strand at 4709.550 kb on + strand at 4709.717 kb on + strand at 4709.739 kb on + strand at 4709.740 kb on - strand at 4709.740 kb on - strand at 4709.740 kb on - strand at 4709.740 kb on - strand at 4709.740 kb on - strand at 4709.740 kb on - strand at 4709.796 kb on + strand at 4709.802 kb on + strand at 4709.803 kb on - strand at 4709.880 kb on + strand at 4709.901 kb on - strand at 4710.023 kb on + strand, within LU632_RS24715 at 4710.044 kb on - strand, within LU632_RS24715 at 4710.097 kb on + strand, within LU632_RS24715 at 4710.101 kb on + strand, within LU632_RS24715 at 4710.102 kb on - strand, within LU632_RS24715 at 4710.102 kb on - strand, within LU632_RS24715 at 4710.125 kb on - strand, within LU632_RS24715 at 4710.220 kb on - strand, within LU632_RS24715 at 4710.310 kb on + strand, within LU632_RS24715 at 4710.311 kb on - strand, within LU632_RS24715 at 4710.311 kb on - strand, within LU632_RS24715 at 4710.312 kb on + strand, within LU632_RS24715 at 4710.313 kb on - strand, within LU632_RS24715 at 4710.417 kb on + strand at 4710.452 kb on + strand at 4710.473 kb on - strand at 4710.510 kb on - strand at 4710.618 kb on - strand, within LU632_RS24720 at 4710.777 kb on - strand, within LU632_RS24720
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,706,704 + LU632_RS24705 0.45 +0.4 4,706,704 + LU632_RS24705 0.45 -0.0 4,706,705 - LU632_RS24705 0.45 -0.7 4,706,705 - LU632_RS24705 0.45 +1.0 4,706,705 - LU632_RS24705 0.45 -1.6 4,706,705 - LU632_RS24705 0.45 +1.4 4,706,705 - LU632_RS24705 0.45 +0.2 4,706,735 - LU632_RS24705 0.48 +0.0 4,706,737 - LU632_RS24705 0.48 +0.9 4,706,799 + LU632_RS24705 0.53 -0.7 4,706,800 - LU632_RS24705 0.53 -0.6 4,706,863 - LU632_RS24705 0.58 +0.0 4,706,867 + LU632_RS24705 0.58 +0.6 4,706,904 + LU632_RS24705 0.61 -0.2 4,706,904 + LU632_RS24705 0.61 -0.2 4,706,905 - LU632_RS24705 0.61 -0.0 4,706,918 + LU632_RS24705 0.62 +0.6 4,706,919 - LU632_RS24705 0.62 -0.4 4,706,943 + LU632_RS24705 0.64 -0.2 4,707,014 + LU632_RS24705 0.70 +0.1 4,707,051 + LU632_RS24705 0.73 -0.4 4,707,052 - LU632_RS24705 0.73 -0.4 4,707,072 + LU632_RS24705 0.74 +0.6 4,707,073 - LU632_RS24705 0.74 +0.1 4,707,085 + LU632_RS24705 0.75 -0.0 4,707,086 - LU632_RS24705 0.75 -0.2 4,707,185 - LU632_RS24705 0.83 +0.0 4,707,190 - LU632_RS24705 0.84 +0.4 4,707,267 + LU632_RS24705 0.90 +0.3 4,707,277 - +0.4 4,707,470 + -0.3 4,707,651 + LU632_RS24710 0.11 -0.5 4,707,651 + LU632_RS24710 0.11 +0.1 4,707,688 + LU632_RS24710 0.12 +1.0 4,707,694 - LU632_RS24710 0.12 +0.8 4,707,805 + LU632_RS24710 0.17 +1.0 4,707,806 + LU632_RS24710 0.17 -0.3 4,707,807 - LU632_RS24710 0.17 +0.1 4,707,957 + LU632_RS24710 0.23 +1.0 4,707,963 + LU632_RS24710 0.24 -0.4 4,707,963 + LU632_RS24710 0.24 +1.1 4,708,007 + LU632_RS24710 0.26 -0.2 4,708,008 - LU632_RS24710 0.26 -0.3 4,708,018 - LU632_RS24710 0.26 -0.7 4,708,021 + LU632_RS24710 0.26 -0.6 4,708,022 - LU632_RS24710 0.26 -2.0 4,708,037 + LU632_RS24710 0.27 +1.3 4,708,038 - LU632_RS24710 0.27 +0.4 4,708,040 - LU632_RS24710 0.27 -0.0 4,708,040 - LU632_RS24710 0.27 +3.3 4,708,091 - LU632_RS24710 0.29 +1.0 4,708,147 + LU632_RS24710 0.31 +0.6 4,708,147 + LU632_RS24710 0.31 -0.3 4,708,199 + LU632_RS24710 0.34 +0.1 4,708,385 + LU632_RS24710 0.41 -0.4 4,708,385 + LU632_RS24710 0.41 -0.4 4,708,387 + LU632_RS24710 0.41 +0.3 4,708,387 + LU632_RS24710 0.41 -0.9 4,708,387 + LU632_RS24710 0.41 +0.4 4,708,387 + LU632_RS24710 0.41 +2.1 4,708,387 + LU632_RS24710 0.41 -1.3 4,708,388 - LU632_RS24710 0.41 +0.3 4,708,388 - LU632_RS24710 0.41 +0.5 4,708,487 - LU632_RS24710 0.46 +0.5 4,708,487 - LU632_RS24710 0.46 -0.0 4,708,487 - LU632_RS24710 0.46 +0.1 4,708,490 + LU632_RS24710 0.46 -0.3 4,708,490 + LU632_RS24710 0.46 -1.3 4,708,490 + LU632_RS24710 0.46 +0.1 4,708,544 + LU632_RS24710 0.48 +0.1 4,708,552 + LU632_RS24710 0.48 -0.8 4,708,582 + LU632_RS24710 0.50 -0.1 4,708,601 + LU632_RS24710 0.50 -0.7 4,708,602 - LU632_RS24710 0.50 +0.0 4,708,602 - LU632_RS24710 0.50 -0.6 4,708,602 - LU632_RS24710 0.50 +1.0 4,708,602 - LU632_RS24710 0.50 +1.8 4,708,602 - LU632_RS24710 0.50 +0.5 4,708,602 - LU632_RS24710 0.50 +0.0 4,708,602 - LU632_RS24710 0.50 -0.1 4,708,603 + LU632_RS24710 0.50 -0.3 4,708,604 - LU632_RS24710 0.51 -1.6 4,708,638 - LU632_RS24710 0.52 +0.3 4,708,644 - LU632_RS24710 0.52 -1.5 4,708,793 - LU632_RS24710 0.58 -0.8 4,708,793 - LU632_RS24710 0.58 -0.2 4,708,856 - LU632_RS24710 0.61 +0.1 4,708,875 - LU632_RS24710 0.62 -0.0 4,708,919 - LU632_RS24710 0.64 -0.2 4,708,969 - LU632_RS24710 0.66 -0.8 4,708,969 - LU632_RS24710 0.66 -0.4 4,709,038 + LU632_RS24710 0.69 -1.3 4,709,038 + LU632_RS24710 0.69 +0.0 4,709,076 - LU632_RS24710 0.70 -0.3 4,709,120 - LU632_RS24710 0.72 +2.3 4,709,323 - LU632_RS24710 0.81 +0.4 4,709,323 - LU632_RS24710 0.81 +1.0 4,709,371 + LU632_RS24710 0.83 -0.1 4,709,372 - LU632_RS24710 0.83 -0.8 4,709,372 - LU632_RS24710 0.83 -1.1 4,709,376 - LU632_RS24710 0.83 +1.2 4,709,376 - LU632_RS24710 0.83 -0.1 4,709,412 - LU632_RS24710 0.84 -0.5 4,709,413 + LU632_RS24710 0.84 -0.6 4,709,413 + LU632_RS24710 0.84 +0.3 4,709,413 + LU632_RS24710 0.84 -0.7 4,709,413 + LU632_RS24710 0.84 +1.0 4,709,414 - LU632_RS24710 0.84 +0.5 4,709,414 - LU632_RS24710 0.84 -0.2 4,709,414 - LU632_RS24710 0.84 +0.1 4,709,414 - LU632_RS24710 0.84 -0.4 4,709,414 - LU632_RS24710 0.84 -0.3 4,709,471 + LU632_RS24710 0.87 +0.6 4,709,519 + LU632_RS24710 0.89 -0.0 4,709,550 + +0.3 4,709,550 + -0.2 4,709,550 + -0.3 4,709,717 + +1.3 4,709,739 + -0.2 4,709,740 - +0.0 4,709,740 - -2.3 4,709,740 - +0.6 4,709,740 - +0.1 4,709,740 - -0.8 4,709,740 - +0.4 4,709,796 + +0.2 4,709,802 + -0.1 4,709,803 - +1.0 4,709,880 + -0.2 4,709,901 - -0.0 4,710,023 + LU632_RS24715 0.26 -0.4 4,710,044 - LU632_RS24715 0.30 +0.0 4,710,097 + LU632_RS24715 0.40 -0.0 4,710,101 + LU632_RS24715 0.40 -0.1 4,710,102 - LU632_RS24715 0.41 +0.6 4,710,102 - LU632_RS24715 0.41 +0.2 4,710,125 - LU632_RS24715 0.45 -0.0 4,710,220 - LU632_RS24715 0.63 -0.1 4,710,310 + LU632_RS24715 0.80 +0.0 4,710,311 - LU632_RS24715 0.80 +0.2 4,710,311 - LU632_RS24715 0.80 -0.8 4,710,312 + LU632_RS24715 0.80 +0.2 4,710,313 - LU632_RS24715 0.80 +0.7 4,710,417 + -0.0 4,710,452 + +0.7 4,710,473 - -0.8 4,710,510 - -0.0 4,710,618 - LU632_RS24720 0.17 +0.2 4,710,777 - LU632_RS24720 0.37 +0.2
Or see this region's nucleotide sequence