Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21005 and LU632_RS21010 are separated by 8 nucleotides LU632_RS21010 and LU632_RS21015 are separated by 71 nucleotides LU632_RS21015 and LU632_RS21020 overlap by 78 nucleotides
LU632_RS21005: LU632_RS21005 - U32 family peptidase, at 4,013,562 to 4,014,557
_RS21005
LU632_RS21010: LU632_RS21010 - U32 family peptidase, at 4,014,566 to 4,015,459
_RS21010
LU632_RS21015: LU632_RS21015 - IS5 family transposase, at 4,015,531 to 4,016,041
_RS21015
LU632_RS21020: LU632_RS21020 - IS110 family transposase, at 4,015,964 to 4,017,026
_RS21020
Position (kb) 4014
4015
4016 Strain fitness (log2 ratio) -1
0
1 at 4013.635 kb on - strand at 4013.718 kb on + strand, within LU632_RS21005 at 4013.760 kb on - strand, within LU632_RS21005 at 4014.122 kb on + strand, within LU632_RS21005 at 4014.122 kb on + strand, within LU632_RS21005 at 4014.122 kb on + strand, within LU632_RS21005 at 4014.123 kb on - strand, within LU632_RS21005 at 4014.123 kb on - strand, within LU632_RS21005 at 4014.123 kb on - strand, within LU632_RS21005 at 4014.123 kb on - strand, within LU632_RS21005 at 4014.125 kb on + strand, within LU632_RS21005 at 4014.125 kb on + strand, within LU632_RS21005 at 4014.126 kb on - strand, within LU632_RS21005 at 4014.126 kb on - strand, within LU632_RS21005 at 4014.126 kb on - strand, within LU632_RS21005 at 4014.267 kb on + strand, within LU632_RS21005 at 4014.267 kb on + strand, within LU632_RS21005 at 4014.268 kb on - strand, within LU632_RS21005 at 4014.268 kb on - strand, within LU632_RS21005 at 4014.268 kb on - strand, within LU632_RS21005 at 4014.321 kb on - strand, within LU632_RS21005 at 4014.403 kb on + strand, within LU632_RS21005 at 4014.403 kb on + strand, within LU632_RS21005 at 4014.403 kb on + strand, within LU632_RS21005 at 4014.404 kb on - strand, within LU632_RS21005 at 4014.404 kb on - strand, within LU632_RS21005 at 4014.446 kb on + strand, within LU632_RS21005 at 4014.469 kb on - strand at 4014.505 kb on + strand at 4014.505 kb on + strand at 4014.538 kb on - strand at 4014.573 kb on - strand at 4014.573 kb on - strand at 4014.615 kb on + strand at 4014.616 kb on - strand at 4014.658 kb on + strand, within LU632_RS21010 at 4014.662 kb on + strand, within LU632_RS21010 at 4014.678 kb on + strand, within LU632_RS21010 at 4014.679 kb on - strand, within LU632_RS21010 at 4014.809 kb on - strand, within LU632_RS21010 at 4014.921 kb on - strand, within LU632_RS21010 at 4014.946 kb on - strand, within LU632_RS21010 at 4015.036 kb on + strand, within LU632_RS21010 at 4015.080 kb on + strand, within LU632_RS21010 at 4015.156 kb on + strand, within LU632_RS21010 at 4015.352 kb on - strand, within LU632_RS21010 at 4015.417 kb on + strand at 4015.418 kb on - strand at 4015.418 kb on - strand at 4015.471 kb on - strand at 4015.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 4,013,635 - +0.3 4,013,718 + LU632_RS21005 0.16 -0.1 4,013,760 - LU632_RS21005 0.20 +0.2 4,014,122 + LU632_RS21005 0.56 -0.1 4,014,122 + LU632_RS21005 0.56 +0.2 4,014,122 + LU632_RS21005 0.56 -0.1 4,014,123 - LU632_RS21005 0.56 +0.6 4,014,123 - LU632_RS21005 0.56 +0.7 4,014,123 - LU632_RS21005 0.56 +0.3 4,014,123 - LU632_RS21005 0.56 +0.6 4,014,125 + LU632_RS21005 0.57 +0.1 4,014,125 + LU632_RS21005 0.57 +0.9 4,014,126 - LU632_RS21005 0.57 -0.8 4,014,126 - LU632_RS21005 0.57 +0.3 4,014,126 - LU632_RS21005 0.57 +0.2 4,014,267 + LU632_RS21005 0.71 -0.2 4,014,267 + LU632_RS21005 0.71 +1.1 4,014,268 - LU632_RS21005 0.71 +0.9 4,014,268 - LU632_RS21005 0.71 +0.0 4,014,268 - LU632_RS21005 0.71 +0.3 4,014,321 - LU632_RS21005 0.76 +0.6 4,014,403 + LU632_RS21005 0.84 +0.5 4,014,403 + LU632_RS21005 0.84 +0.3 4,014,403 + LU632_RS21005 0.84 +0.3 4,014,404 - LU632_RS21005 0.85 -0.5 4,014,404 - LU632_RS21005 0.85 +0.6 4,014,446 + LU632_RS21005 0.89 +0.3 4,014,469 - -1.5 4,014,505 + -0.4 4,014,505 + -0.3 4,014,538 - -0.1 4,014,573 - +0.7 4,014,573 - -0.4 4,014,615 + -1.3 4,014,616 - -0.0 4,014,658 + LU632_RS21010 0.10 -0.4 4,014,662 + LU632_RS21010 0.11 -0.4 4,014,678 + LU632_RS21010 0.13 +1.7 4,014,679 - LU632_RS21010 0.13 +0.5 4,014,809 - LU632_RS21010 0.27 +0.2 4,014,921 - LU632_RS21010 0.40 +0.1 4,014,946 - LU632_RS21010 0.43 -0.0 4,015,036 + LU632_RS21010 0.53 +0.6 4,015,080 + LU632_RS21010 0.57 -0.8 4,015,156 + LU632_RS21010 0.66 +0.5 4,015,352 - LU632_RS21010 0.88 -0.1 4,015,417 + -0.1 4,015,418 - +0.2 4,015,418 - +0.4 4,015,471 - -0.0 4,015,471 - -0.7
Or see this region's nucleotide sequence