Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18740

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS18730 and LU632_RS18735 overlap by 1 nucleotidesLU632_RS18735 and LU632_RS18740 are separated by 1 nucleotidesLU632_RS18740 and LU632_RS18745 are separated by 2 nucleotidesLU632_RS18745 and LU632_RS18750 overlap by 8 nucleotidesLU632_RS18750 and LU632_RS18755 overlap by 1 nucleotides LU632_RS18730: LU632_RS18730 - hypothetical protein, at 3,539,317 to 3,540,879 _RS18730 LU632_RS18735: LU632_RS18735 - DUF3486 family protein, at 3,540,879 to 3,541,451 _RS18735 LU632_RS18740: LU632_RS18740 - hypothetical protein, at 3,541,453 to 3,541,740 _RS18740 LU632_RS18745: LU632_RS18745 - DUF2730 family protein, at 3,541,743 to 3,542,036 _RS18745 LU632_RS18750: LU632_RS18750 - TraR/DksA C4-type zinc finger protein, at 3,542,029 to 3,542,253 _RS18750 LU632_RS18755: LU632_RS18755 - hypothetical protein, at 3,542,253 to 3,542,855 _RS18755 Position (kb) 3541 3542Strain fitness (log2 ratio) -1 0 1at 3542.471 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.473 kb on + strand, within LU632_RS18755at 3542.507 kb on - strand, within LU632_RS18755at 3542.722 kb on - strand, within LU632_RS18755at 3542.722 kb on - strand, within LU632_RS18755

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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3,542,471 + LU632_RS18755 0.36 +0.1
3,542,473 + LU632_RS18755 0.36 -0.8
3,542,473 + LU632_RS18755 0.36 +0.4
3,542,473 + LU632_RS18755 0.36 +0.8
3,542,473 + LU632_RS18755 0.36 -0.2
3,542,473 + LU632_RS18755 0.36 +0.8
3,542,473 + LU632_RS18755 0.36 -0.4
3,542,507 - LU632_RS18755 0.42 +0.4
3,542,722 - LU632_RS18755 0.78 -0.4
3,542,722 - LU632_RS18755 0.78 -0.1

Or see this region's nucleotide sequence