Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17965 and LU632_RS17970 are separated by 113 nucleotides LU632_RS17970 and purL are separated by 159 nucleotides purL and mltF are separated by 270 nucleotides
LU632_RS17965: LU632_RS17965 - IS481 family transposase, at 3,390,168 to 3,391,208
_RS17965
LU632_RS17970: LU632_RS17970 - transposase domain-containing protein, at 3,391,322 to 3,391,465
_RS17970
LU632_RS17975: purL - phosphoribosylformylglycinamidine synthase, at 3,391,625 to 3,395,512
purL
LU632_RS17980: mltF - membrane-bound lytic murein transglycosylase MltF, at 3,395,783 to 3,397,243
mltF
Position (kb) 3391
3392
3393
3394
3395
3396 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.514 kb on + strand at 3391.558 kb on + strand at 3391.559 kb on - strand at 3391.601 kb on - strand at 3391.626 kb on + strand at 3391.658 kb on - strand at 3391.744 kb on + strand at 3391.744 kb on + strand at 3391.745 kb on - strand at 3391.840 kb on + strand at 3391.870 kb on + strand at 3392.173 kb on + strand, within purL at 3392.217 kb on - strand, within purL at 3392.289 kb on - strand, within purL at 3392.382 kb on - strand, within purL at 3392.399 kb on + strand, within purL at 3392.400 kb on - strand, within purL at 3392.578 kb on + strand, within purL at 3392.593 kb on - strand, within purL at 3392.594 kb on + strand, within purL at 3392.614 kb on + strand, within purL at 3392.618 kb on - strand, within purL at 3392.650 kb on + strand, within purL at 3392.650 kb on + strand, within purL at 3392.651 kb on - strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.652 kb on + strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.653 kb on - strand, within purL at 3392.789 kb on - strand, within purL at 3392.942 kb on + strand, within purL at 3392.943 kb on - strand, within purL at 3393.182 kb on - strand, within purL at 3393.255 kb on + strand, within purL at 3393.255 kb on + strand, within purL at 3393.256 kb on - strand, within purL at 3393.256 kb on - strand, within purL at 3393.447 kb on + strand, within purL at 3393.448 kb on - strand, within purL at 3393.482 kb on - strand, within purL at 3393.542 kb on - strand, within purL at 3393.719 kb on - strand, within purL at 3393.730 kb on + strand, within purL at 3393.731 kb on - strand, within purL at 3393.733 kb on + strand, within purL at 3393.736 kb on + strand, within purL at 3393.736 kb on + strand, within purL at 3393.737 kb on - strand, within purL at 3393.742 kb on - strand, within purL at 3393.865 kb on - strand, within purL at 3393.890 kb on + strand, within purL at 3393.891 kb on - strand, within purL at 3393.891 kb on - strand, within purL at 3393.891 kb on - strand, within purL at 3394.150 kb on + strand, within purL at 3394.240 kb on + strand, within purL at 3394.341 kb on + strand, within purL at 3394.435 kb on + strand, within purL at 3394.441 kb on + strand, within purL at 3394.441 kb on + strand, within purL at 3394.442 kb on - strand, within purL at 3394.677 kb on + strand, within purL at 3394.677 kb on + strand, within purL at 3394.693 kb on + strand, within purL at 3394.694 kb on - strand, within purL at 3394.697 kb on - strand, within purL at 3394.697 kb on - strand, within purL at 3394.698 kb on + strand, within purL at 3394.699 kb on - strand, within purL at 3394.699 kb on - strand, within purL at 3394.783 kb on + strand, within purL at 3394.891 kb on + strand, within purL at 3394.891 kb on + strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.892 kb on - strand, within purL at 3394.893 kb on + strand, within purL at 3394.893 kb on + strand, within purL at 3394.893 kb on + strand, within purL at 3394.894 kb on - strand, within purL at 3395.024 kb on + strand, within purL at 3395.025 kb on - strand, within purL at 3395.025 kb on - strand, within purL at 3395.025 kb on - strand, within purL at 3395.026 kb on + strand, within purL at 3395.123 kb on + strand, within purL at 3395.176 kb on - strand at 3395.224 kb on + strand at 3395.225 kb on - strand at 3395.291 kb on + strand at 3395.291 kb on + strand at 3395.292 kb on - strand at 3395.331 kb on + strand at 3395.332 kb on - strand at 3395.332 kb on - strand at 3395.332 kb on - strand at 3395.413 kb on - strand at 3395.461 kb on + strand at 3395.462 kb on - strand at 3395.581 kb on + strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.584 kb on - strand at 3395.625 kb on - strand at 3395.732 kb on + strand at 3395.732 kb on + strand at 3395.732 kb on + strand at 3395.733 kb on - strand at 3395.733 kb on - strand at 3395.737 kb on - strand at 3395.737 kb on - strand at 3395.799 kb on + strand at 3395.913 kb on + strand at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.948 kb on + strand, within mltF at 3395.949 kb on - strand, within mltF at 3395.949 kb on - strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.950 kb on + strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3395.951 kb on - strand, within mltF at 3396.011 kb on + strand, within mltF at 3396.012 kb on - strand, within mltF at 3396.155 kb on + strand, within mltF at 3396.158 kb on + strand, within mltF at 3396.159 kb on - strand, within mltF at 3396.235 kb on + strand, within mltF at 3396.257 kb on + strand, within mltF at 3396.326 kb on - strand, within mltF at 3396.375 kb on - strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.473 kb on + strand, within mltF at 3396.475 kb on + strand, within mltF at 3396.475 kb on + strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF at 3396.476 kb on - strand, within mltF
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 3,391,514 + +0.3 3,391,514 + +0.3 3,391,514 + -0.5 3,391,514 + +0.7 3,391,514 + +0.4 3,391,558 + -1.3 3,391,559 - -0.4 3,391,601 - -0.4 3,391,626 + -0.3 3,391,658 - -0.8 3,391,744 + -3.8 3,391,744 + -2.7 3,391,745 - -1.6 3,391,840 + -4.5 3,391,870 + -4.3 3,392,173 + purL LU632_RS17975 0.14 -2.4 3,392,217 - purL LU632_RS17975 0.15 -4.2 3,392,289 - purL LU632_RS17975 0.17 -2.1 3,392,382 - purL LU632_RS17975 0.19 -1.6 3,392,399 + purL LU632_RS17975 0.20 -3.2 3,392,400 - purL LU632_RS17975 0.20 -2.8 3,392,578 + purL LU632_RS17975 0.25 -6.0 3,392,593 - purL LU632_RS17975 0.25 -3.5 3,392,594 + purL LU632_RS17975 0.25 -4.5 3,392,614 + purL LU632_RS17975 0.25 -1.7 3,392,618 - purL LU632_RS17975 0.26 -3.5 3,392,650 + purL LU632_RS17975 0.26 -1.8 3,392,650 + purL LU632_RS17975 0.26 -0.8 3,392,651 - purL LU632_RS17975 0.26 -1.3 3,392,652 + purL LU632_RS17975 0.26 -1.8 3,392,652 + purL LU632_RS17975 0.26 -3.8 3,392,652 + purL LU632_RS17975 0.26 +0.7 3,392,652 + purL LU632_RS17975 0.26 -3.3 3,392,653 - purL LU632_RS17975 0.26 -4.0 3,392,653 - purL LU632_RS17975 0.26 -2.8 3,392,653 - purL LU632_RS17975 0.26 -3.2 3,392,653 - purL LU632_RS17975 0.26 -4.0 3,392,653 - purL LU632_RS17975 0.26 -3.3 3,392,653 - purL LU632_RS17975 0.26 -3.8 3,392,789 - purL LU632_RS17975 0.30 -2.9 3,392,942 + purL LU632_RS17975 0.34 -4.4 3,392,943 - purL LU632_RS17975 0.34 -4.1 3,393,182 - purL LU632_RS17975 0.40 -1.8 3,393,255 + purL LU632_RS17975 0.42 -2.7 3,393,255 + purL LU632_RS17975 0.42 -2.4 3,393,256 - purL LU632_RS17975 0.42 -2.1 3,393,256 - purL LU632_RS17975 0.42 -3.8 3,393,447 + purL LU632_RS17975 0.47 -4.2 3,393,448 - purL LU632_RS17975 0.47 -1.6 3,393,482 - purL LU632_RS17975 0.48 -2.4 3,393,542 - purL LU632_RS17975 0.49 -4.0 3,393,719 - purL LU632_RS17975 0.54 -4.3 3,393,730 + purL LU632_RS17975 0.54 -3.0 3,393,731 - purL LU632_RS17975 0.54 -3.3 3,393,733 + purL LU632_RS17975 0.54 -3.1 3,393,736 + purL LU632_RS17975 0.54 -0.8 3,393,736 + purL LU632_RS17975 0.54 -1.8 3,393,737 - purL LU632_RS17975 0.54 -1.7 3,393,742 - purL LU632_RS17975 0.54 -2.3 3,393,865 - purL LU632_RS17975 0.58 -2.1 3,393,890 + purL LU632_RS17975 0.58 -2.9 3,393,891 - purL LU632_RS17975 0.58 -0.3 3,393,891 - purL LU632_RS17975 0.58 -2.7 3,393,891 - purL LU632_RS17975 0.58 -2.7 3,394,150 + purL LU632_RS17975 0.65 -4.5 3,394,240 + purL LU632_RS17975 0.67 -3.6 3,394,341 + purL LU632_RS17975 0.70 -4.5 3,394,435 + purL LU632_RS17975 0.72 -3.5 3,394,441 + purL LU632_RS17975 0.72 -4.0 3,394,441 + purL LU632_RS17975 0.72 -0.7 3,394,442 - purL LU632_RS17975 0.72 -3.5 3,394,677 + purL LU632_RS17975 0.78 -2.3 3,394,677 + purL LU632_RS17975 0.78 -4.1 3,394,693 + purL LU632_RS17975 0.79 -2.7 3,394,694 - purL LU632_RS17975 0.79 -0.3 3,394,697 - purL LU632_RS17975 0.79 -4.2 3,394,697 - purL LU632_RS17975 0.79 -3.2 3,394,698 + purL LU632_RS17975 0.79 -2.1 3,394,699 - purL LU632_RS17975 0.79 -3.3 3,394,699 - purL LU632_RS17975 0.79 -1.6 3,394,783 + purL LU632_RS17975 0.81 -4.6 3,394,891 + purL LU632_RS17975 0.84 -3.7 3,394,891 + purL LU632_RS17975 0.84 -2.6 3,394,892 - purL LU632_RS17975 0.84 -4.1 3,394,892 - purL LU632_RS17975 0.84 -3.8 3,394,892 - purL LU632_RS17975 0.84 -2.3 3,394,892 - purL LU632_RS17975 0.84 -3.4 3,394,893 + purL LU632_RS17975 0.84 -2.5 3,394,893 + purL LU632_RS17975 0.84 -5.3 3,394,893 + purL LU632_RS17975 0.84 -0.8 3,394,894 - purL LU632_RS17975 0.84 -4.5 3,395,024 + purL LU632_RS17975 0.87 -3.9 3,395,025 - purL LU632_RS17975 0.87 -1.3 3,395,025 - purL LU632_RS17975 0.87 -2.7 3,395,025 - purL LU632_RS17975 0.87 -4.3 3,395,026 + purL LU632_RS17975 0.87 -3.5 3,395,123 + purL LU632_RS17975 0.90 -1.8 3,395,176 - -4.0 3,395,224 + -1.8 3,395,225 - -0.1 3,395,291 + -2.3 3,395,291 + -2.8 3,395,292 - -3.3 3,395,331 + -3.0 3,395,332 - -0.3 3,395,332 - -2.8 3,395,332 - -4.7 3,395,413 - -2.3 3,395,461 + -3.7 3,395,462 - -2.3 3,395,581 + -4.2 3,395,584 - -0.1 3,395,584 - +0.1 3,395,584 - -0.1 3,395,584 - +0.3 3,395,625 - -0.8 3,395,732 + +0.2 3,395,732 + +1.1 3,395,732 + -0.7 3,395,733 - -0.3 3,395,733 - +0.3 3,395,737 - -0.2 3,395,737 - +0.0 3,395,799 + -0.6 3,395,913 + -0.1 3,395,948 + mltF LU632_RS17980 0.11 +0.1 3,395,948 + mltF LU632_RS17980 0.11 -0.9 3,395,948 + mltF LU632_RS17980 0.11 +1.7 3,395,948 + mltF LU632_RS17980 0.11 +0.7 3,395,948 + mltF LU632_RS17980 0.11 +1.5 3,395,949 - mltF LU632_RS17980 0.11 +0.2 3,395,949 - mltF LU632_RS17980 0.11 +0.0 3,395,950 + mltF LU632_RS17980 0.11 -0.3 3,395,950 + mltF LU632_RS17980 0.11 -0.3 3,395,950 + mltF LU632_RS17980 0.11 -0.2 3,395,951 - mltF LU632_RS17980 0.11 +0.7 3,395,951 - mltF LU632_RS17980 0.11 -2.1 3,395,951 - mltF LU632_RS17980 0.11 +0.1 3,395,951 - mltF LU632_RS17980 0.11 -0.3 3,395,951 - mltF LU632_RS17980 0.11 -0.1 3,395,951 - mltF LU632_RS17980 0.11 +1.2 3,396,011 + mltF LU632_RS17980 0.16 +0.1 3,396,012 - mltF LU632_RS17980 0.16 +0.5 3,396,155 + mltF LU632_RS17980 0.25 -0.4 3,396,158 + mltF LU632_RS17980 0.26 +0.2 3,396,159 - mltF LU632_RS17980 0.26 -0.5 3,396,235 + mltF LU632_RS17980 0.31 -0.6 3,396,257 + mltF LU632_RS17980 0.32 -0.9 3,396,326 - mltF LU632_RS17980 0.37 +0.7 3,396,375 - mltF LU632_RS17980 0.41 -0.6 3,396,473 + mltF LU632_RS17980 0.47 -0.8 3,396,473 + mltF LU632_RS17980 0.47 +0.6 3,396,473 + mltF LU632_RS17980 0.47 -0.9 3,396,475 + mltF LU632_RS17980 0.47 -0.8 3,396,475 + mltF LU632_RS17980 0.47 -0.8 3,396,476 - mltF LU632_RS17980 0.47 +1.3 3,396,476 - mltF LU632_RS17980 0.47 +0.6 3,396,476 - mltF LU632_RS17980 0.47 +0.0 3,396,476 - mltF LU632_RS17980 0.47 +0.9 3,396,476 - mltF LU632_RS17980 0.47 -0.6 3,396,476 - mltF LU632_RS17980 0.47 +0.7
Or see this region's nucleotide sequence