Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08075

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS08060 and LU632_RS08065 overlap by 8 nucleotidesLU632_RS08065 and LU632_RS08070 overlap by 41 nucleotidesLU632_RS08070 and LU632_RS08075 are separated by 166 nucleotidesLU632_RS08075 and LU632_RS08080 are separated by 29 nucleotidesLU632_RS08080 and LU632_RS08085 are separated by 34 nucleotidesLU632_RS08085 and tnpA are separated by 102 nucleotides LU632_RS08060: LU632_RS08060 - phage protease, at 1,512,070 to 1,512,615 _RS08060 LU632_RS08065: LU632_RS08065 - hypothetical protein, at 1,512,608 to 1,512,757 _RS08065 LU632_RS08070: LU632_RS08070 - phage protease, at 1,512,717 to 1,513,373 _RS08070 LU632_RS08075: LU632_RS08075 - BNR repeat-containing protein, at 1,513,540 to 1,514,445 _RS08075 LU632_RS08080: LU632_RS08080 - LysR family transcriptional regulator, at 1,514,475 to 1,514,603 _RS08080 LU632_RS08085: LU632_RS08085 - glyoxalase, at 1,514,638 to 1,514,811 _RS08085 LU632_RS08090: tnpA - IS200/IS605 family transposase, at 1,514,914 to 1,515,339 tnpA Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1512.541 kb on - strand, within LU632_RS08060at 1512.541 kb on - strand, within LU632_RS08060at 1512.591 kb on + strandat 1512.591 kb on + strandat 1512.591 kb on + strandat 1512.591 kb on + strandat 1512.671 kb on - strand, within LU632_RS08065at 1512.845 kb on - strand, within LU632_RS08070at 1512.849 kb on - strand, within LU632_RS08070at 1512.857 kb on + strand, within LU632_RS08070at 1512.857 kb on + strand, within LU632_RS08070at 1512.893 kb on + strand, within LU632_RS08070at 1512.894 kb on - strand, within LU632_RS08070at 1512.894 kb on - strand, within LU632_RS08070at 1512.914 kb on + strand, within LU632_RS08070at 1512.914 kb on + strand, within LU632_RS08070at 1512.914 kb on + strand, within LU632_RS08070at 1512.915 kb on - strand, within LU632_RS08070at 1512.915 kb on - strand, within LU632_RS08070at 1512.998 kb on + strand, within LU632_RS08070at 1512.998 kb on + strand, within LU632_RS08070at 1512.999 kb on - strand, within LU632_RS08070at 1513.025 kb on - strand, within LU632_RS08070at 1513.091 kb on + strand, within LU632_RS08070at 1513.116 kb on - strand, within LU632_RS08070at 1513.164 kb on - strand, within LU632_RS08070at 1513.186 kb on + strand, within LU632_RS08070at 1513.187 kb on - strand, within LU632_RS08070at 1513.247 kb on - strand, within LU632_RS08070at 1513.247 kb on - strand, within LU632_RS08070at 1513.250 kb on + strand, within LU632_RS08070at 1513.273 kb on + strand, within LU632_RS08070at 1513.273 kb on + strand, within LU632_RS08070at 1513.322 kb on + strandat 1513.371 kb on + strandat 1513.372 kb on - strandat 1513.398 kb on + strandat 1513.398 kb on + strandat 1513.399 kb on - strandat 1513.399 kb on - strandat 1513.399 kb on - strandat 1513.417 kb on - strandat 1513.421 kb on + strandat 1513.422 kb on - strandat 1513.449 kb on + strandat 1513.449 kb on + strandat 1513.450 kb on - strandat 1513.450 kb on - strandat 1513.450 kb on - strandat 1513.453 kb on - strandat 1513.458 kb on + strandat 1513.524 kb on + strandat 1513.525 kb on - strandat 1513.681 kb on - strand, within LU632_RS08075at 1513.695 kb on + strand, within LU632_RS08075at 1513.696 kb on - strand, within LU632_RS08075at 1513.696 kb on - strand, within LU632_RS08075at 1513.696 kb on - strand, within LU632_RS08075at 1513.702 kb on - strand, within LU632_RS08075at 1513.758 kb on + strand, within LU632_RS08075at 1513.879 kb on + strand, within LU632_RS08075at 1513.879 kb on + strand, within LU632_RS08075at 1513.879 kb on + strand, within LU632_RS08075at 1513.880 kb on - strand, within LU632_RS08075at 1513.963 kb on + strand, within LU632_RS08075at 1513.963 kb on + strand, within LU632_RS08075at 1514.160 kb on + strand, within LU632_RS08075at 1514.160 kb on + strand, within LU632_RS08075at 1514.161 kb on - strand, within LU632_RS08075at 1514.161 kb on - strand, within LU632_RS08075at 1514.161 kb on - strand, within LU632_RS08075at 1514.169 kb on + strand, within LU632_RS08075at 1514.224 kb on + strand, within LU632_RS08075at 1514.259 kb on + strand, within LU632_RS08075at 1514.407 kb on + strandat 1514.407 kb on + strandat 1514.435 kb on + strandat 1514.435 kb on + strandat 1514.437 kb on + strandat 1514.437 kb on + strandat 1514.496 kb on + strand, within LU632_RS08080at 1514.496 kb on + strand, within LU632_RS08080at 1514.496 kb on + strand, within LU632_RS08080at 1514.499 kb on - strand, within LU632_RS08080at 1514.499 kb on - strand, within LU632_RS08080at 1514.711 kb on + strand, within LU632_RS08085at 1514.712 kb on - strand, within LU632_RS08085at 1514.712 kb on - strand, within LU632_RS08085

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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1,512,541 - LU632_RS08060 0.86 -1.7
1,512,541 - LU632_RS08060 0.86 -1.7
1,512,591 + +1.2
1,512,591 + -0.3
1,512,591 + -1.2
1,512,591 + -0.6
1,512,671 - LU632_RS08065 0.42 +0.0
1,512,845 - LU632_RS08070 0.19 +0.6
1,512,849 - LU632_RS08070 0.20 -2.5
1,512,857 + LU632_RS08070 0.21 +0.0
1,512,857 + LU632_RS08070 0.21 +1.1
1,512,893 + LU632_RS08070 0.27 +0.1
1,512,894 - LU632_RS08070 0.27 -0.1
1,512,894 - LU632_RS08070 0.27 -0.2
1,512,914 + LU632_RS08070 0.30 -0.3
1,512,914 + LU632_RS08070 0.30 -0.1
1,512,914 + LU632_RS08070 0.30 +0.5
1,512,915 - LU632_RS08070 0.30 +0.8
1,512,915 - LU632_RS08070 0.30 -0.4
1,512,998 + LU632_RS08070 0.43 -0.3
1,512,998 + LU632_RS08070 0.43 -0.7
1,512,999 - LU632_RS08070 0.43 -0.4
1,513,025 - LU632_RS08070 0.47 -0.2
1,513,091 + LU632_RS08070 0.57 -0.2
1,513,116 - LU632_RS08070 0.61 -0.1
1,513,164 - LU632_RS08070 0.68 -0.1
1,513,186 + LU632_RS08070 0.71 +0.4
1,513,187 - LU632_RS08070 0.72 -0.5
1,513,247 - LU632_RS08070 0.81 +0.2
1,513,247 - LU632_RS08070 0.81 -0.1
1,513,250 + LU632_RS08070 0.81 +0.4
1,513,273 + LU632_RS08070 0.85 -0.0
1,513,273 + LU632_RS08070 0.85 +0.5
1,513,322 + +0.5
1,513,371 + +0.2
1,513,372 - -0.7
1,513,398 + +1.2
1,513,398 + -0.4
1,513,399 - -0.7
1,513,399 - -2.8
1,513,399 - +0.1
1,513,417 - -0.5
1,513,421 + -0.2
1,513,422 - -0.6
1,513,449 + +0.8
1,513,449 + -0.5
1,513,450 - -0.1
1,513,450 - +0.1
1,513,450 - +0.6
1,513,453 - +0.0
1,513,458 + -0.5
1,513,524 + +0.2
1,513,525 - +0.1
1,513,681 - LU632_RS08075 0.16 +1.3
1,513,695 + LU632_RS08075 0.17 -0.1
1,513,696 - LU632_RS08075 0.17 +0.1
1,513,696 - LU632_RS08075 0.17 -0.1
1,513,696 - LU632_RS08075 0.17 +0.6
1,513,702 - LU632_RS08075 0.18 +0.3
1,513,758 + LU632_RS08075 0.24 +0.2
1,513,879 + LU632_RS08075 0.37 -0.0
1,513,879 + LU632_RS08075 0.37 +0.6
1,513,879 + LU632_RS08075 0.37 -0.4
1,513,880 - LU632_RS08075 0.38 -0.4
1,513,963 + LU632_RS08075 0.47 +0.9
1,513,963 + LU632_RS08075 0.47 +0.3
1,514,160 + LU632_RS08075 0.68 -0.1
1,514,160 + LU632_RS08075 0.68 -0.6
1,514,161 - LU632_RS08075 0.69 -0.5
1,514,161 - LU632_RS08075 0.69 -1.1
1,514,161 - LU632_RS08075 0.69 +0.1
1,514,169 + LU632_RS08075 0.69 +0.9
1,514,224 + LU632_RS08075 0.75 +2.0
1,514,259 + LU632_RS08075 0.79 -0.4
1,514,407 + +1.2
1,514,407 + +0.6
1,514,435 + -1.4
1,514,435 + -0.1
1,514,437 + -0.8
1,514,437 + +0.5
1,514,496 + LU632_RS08080 0.16 -0.3
1,514,496 + LU632_RS08080 0.16 +3.4
1,514,496 + LU632_RS08080 0.16 +0.6
1,514,499 - LU632_RS08080 0.19 +2.4
1,514,499 - LU632_RS08080 0.19 -1.6
1,514,711 + LU632_RS08085 0.42 +0.2
1,514,712 - LU632_RS08085 0.43 -0.8
1,514,712 - LU632_RS08085 0.43 -0.1

Or see this region's nucleotide sequence