Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mltC and LU632_RS05415 are separated by 51 nucleotides LU632_RS05415 and mutY overlap by 38 nucleotides mutY and trmB are separated by 151 nucleotides trmB and LU632_RS05430 overlap by 1 nucleotides
LU632_RS05410: mltC - membrane-bound lytic murein transglycosylase MltC, at 1,045,822 to 1,046,901
mltC
LU632_RS05415: LU632_RS05415 - oxidative damage protection protein, at 1,046,953 to 1,047,225
_RS05415
LU632_RS05420: mutY - A/G-specific adenine glycosylase, at 1,047,188 to 1,048,339
mutY
LU632_RS05425: trmB - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,048,491 to 1,049,210
trmB
LU632_RS05430: LU632_RS05430 - YggL family protein, at 1,049,210 to 1,049,536
_RS05430
Position (kb) 1047
1048
1049 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1046.331 kb on + strand, within mltC at 1046.331 kb on + strand, within mltC at 1046.332 kb on - strand, within mltC at 1046.332 kb on - strand, within mltC at 1046.365 kb on - strand, within mltC at 1046.414 kb on - strand, within mltC at 1046.432 kb on + strand, within mltC at 1046.507 kb on - strand, within mltC at 1046.635 kb on - strand, within mltC at 1046.684 kb on + strand, within mltC at 1046.684 kb on + strand, within mltC at 1046.685 kb on - strand, within mltC at 1046.685 kb on - strand, within mltC at 1046.687 kb on + strand, within mltC at 1046.688 kb on - strand, within mltC at 1046.700 kb on - strand, within mltC at 1046.703 kb on + strand, within mltC at 1046.703 kb on + strand, within mltC at 1046.704 kb on - strand, within mltC at 1046.708 kb on + strand, within mltC at 1046.752 kb on - strand, within mltC at 1046.879 kb on - strand at 1046.904 kb on + strand at 1046.923 kb on + strand at 1046.923 kb on + strand at 1046.970 kb on + strand at 1047.085 kb on - strand, within LU632_RS05415 at 1047.085 kb on - strand, within LU632_RS05415 at 1047.134 kb on + strand, within LU632_RS05415 at 1047.138 kb on + strand, within LU632_RS05415 at 1047.138 kb on + strand, within LU632_RS05415 at 1047.138 kb on + strand, within LU632_RS05415 at 1047.139 kb on - strand, within LU632_RS05415 at 1047.226 kb on + strand at 1047.363 kb on - strand, within mutY at 1047.367 kb on + strand, within mutY at 1047.367 kb on + strand, within mutY at 1047.368 kb on - strand, within mutY at 1047.370 kb on - strand, within mutY at 1047.502 kb on + strand, within mutY at 1047.503 kb on - strand, within mutY at 1047.681 kb on + strand, within mutY at 1047.682 kb on - strand, within mutY at 1047.796 kb on + strand, within mutY at 1047.866 kb on - strand, within mutY at 1047.889 kb on + strand, within mutY at 1047.954 kb on - strand, within mutY at 1047.977 kb on - strand, within mutY at 1048.015 kb on - strand, within mutY at 1048.015 kb on - strand, within mutY at 1048.089 kb on + strand, within mutY at 1048.113 kb on + strand, within mutY at 1048.114 kb on - strand, within mutY at 1048.114 kb on - strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.115 kb on + strand, within mutY at 1048.116 kb on - strand, within mutY at 1048.116 kb on - strand, within mutY at 1048.116 kb on - strand, within mutY at 1048.153 kb on + strand, within mutY at 1048.154 kb on - strand, within mutY at 1048.154 kb on - strand, within mutY at 1048.154 kb on - strand, within mutY at 1048.172 kb on - strand, within mutY at 1048.243 kb on + strand at 1048.244 kb on - strand at 1048.244 kb on - strand at 1048.297 kb on - strand at 1048.347 kb on + strand at 1048.403 kb on + strand at 1048.448 kb on + strand at 1048.486 kb on + strand at 1048.868 kb on + strand, within trmB at 1048.874 kb on + strand, within trmB at 1048.874 kb on + strand, within trmB at 1048.875 kb on - strand, within trmB at 1048.875 kb on - strand, within trmB at 1048.967 kb on - strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.051 kb on + strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.052 kb on - strand, within trmB at 1049.073 kb on - strand, within trmB at 1049.109 kb on + strand, within trmB at 1049.109 kb on + strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.110 kb on - strand, within trmB at 1049.113 kb on + strand, within trmB
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 1,046,331 + mltC LU632_RS05410 0.47 +0.2 1,046,331 + mltC LU632_RS05410 0.47 -0.7 1,046,332 - mltC LU632_RS05410 0.47 -2.1 1,046,332 - mltC LU632_RS05410 0.47 -1.7 1,046,365 - mltC LU632_RS05410 0.50 -2.9 1,046,414 - mltC LU632_RS05410 0.55 -0.7 1,046,432 + mltC LU632_RS05410 0.56 -0.1 1,046,507 - mltC LU632_RS05410 0.63 +0.0 1,046,635 - mltC LU632_RS05410 0.75 -1.1 1,046,684 + mltC LU632_RS05410 0.80 -2.1 1,046,684 + mltC LU632_RS05410 0.80 -2.1 1,046,685 - mltC LU632_RS05410 0.80 +1.3 1,046,685 - mltC LU632_RS05410 0.80 +0.0 1,046,687 + mltC LU632_RS05410 0.80 -1.2 1,046,688 - mltC LU632_RS05410 0.80 -2.5 1,046,700 - mltC LU632_RS05410 0.81 -1.7 1,046,703 + mltC LU632_RS05410 0.82 -1.4 1,046,703 + mltC LU632_RS05410 0.82 +0.4 1,046,704 - mltC LU632_RS05410 0.82 -1.4 1,046,708 + mltC LU632_RS05410 0.82 -2.1 1,046,752 - mltC LU632_RS05410 0.86 -1.1 1,046,879 - -1.8 1,046,904 + -0.8 1,046,923 + -0.1 1,046,923 + -0.1 1,046,970 + -1.1 1,047,085 - LU632_RS05415 0.48 -0.6 1,047,085 - LU632_RS05415 0.48 -0.4 1,047,134 + LU632_RS05415 0.66 -0.5 1,047,138 + LU632_RS05415 0.68 -0.6 1,047,138 + LU632_RS05415 0.68 -3.4 1,047,138 + LU632_RS05415 0.68 +0.8 1,047,139 - LU632_RS05415 0.68 -0.4 1,047,226 + -0.2 1,047,363 - mutY LU632_RS05420 0.15 +0.2 1,047,367 + mutY LU632_RS05420 0.16 +0.8 1,047,367 + mutY LU632_RS05420 0.16 -0.1 1,047,368 - mutY LU632_RS05420 0.16 -0.3 1,047,370 - mutY LU632_RS05420 0.16 -0.3 1,047,502 + mutY LU632_RS05420 0.27 -0.1 1,047,503 - mutY LU632_RS05420 0.27 -0.3 1,047,681 + mutY LU632_RS05420 0.43 +1.8 1,047,682 - mutY LU632_RS05420 0.43 -0.2 1,047,796 + mutY LU632_RS05420 0.53 +0.0 1,047,866 - mutY LU632_RS05420 0.59 +0.0 1,047,889 + mutY LU632_RS05420 0.61 +0.3 1,047,954 - mutY LU632_RS05420 0.66 +0.3 1,047,977 - mutY LU632_RS05420 0.68 +0.5 1,048,015 - mutY LU632_RS05420 0.72 +0.2 1,048,015 - mutY LU632_RS05420 0.72 +0.2 1,048,089 + mutY LU632_RS05420 0.78 +0.1 1,048,113 + mutY LU632_RS05420 0.80 -0.1 1,048,114 - mutY LU632_RS05420 0.80 +1.5 1,048,114 - mutY LU632_RS05420 0.80 -0.2 1,048,115 + mutY LU632_RS05420 0.80 -0.1 1,048,115 + mutY LU632_RS05420 0.80 +0.1 1,048,115 + mutY LU632_RS05420 0.80 +0.5 1,048,115 + mutY LU632_RS05420 0.80 +2.1 1,048,115 + mutY LU632_RS05420 0.80 -2.1 1,048,115 + mutY LU632_RS05420 0.80 +1.0 1,048,115 + mutY LU632_RS05420 0.80 +0.5 1,048,115 + mutY LU632_RS05420 0.80 +0.7 1,048,116 - mutY LU632_RS05420 0.81 -0.9 1,048,116 - mutY LU632_RS05420 0.81 +0.2 1,048,116 - mutY LU632_RS05420 0.81 -0.8 1,048,153 + mutY LU632_RS05420 0.84 -1.1 1,048,154 - mutY LU632_RS05420 0.84 +0.8 1,048,154 - mutY LU632_RS05420 0.84 +2.2 1,048,154 - mutY LU632_RS05420 0.84 +0.5 1,048,172 - mutY LU632_RS05420 0.85 -0.1 1,048,243 + +0.2 1,048,244 - +0.4 1,048,244 - +0.4 1,048,297 - +0.3 1,048,347 + -0.8 1,048,403 + +0.9 1,048,448 + +0.1 1,048,486 + -0.5 1,048,868 + trmB LU632_RS05425 0.52 +0.2 1,048,874 + trmB LU632_RS05425 0.53 -0.4 1,048,874 + trmB LU632_RS05425 0.53 -1.0 1,048,875 - trmB LU632_RS05425 0.53 -0.3 1,048,875 - trmB LU632_RS05425 0.53 +0.5 1,048,967 - trmB LU632_RS05425 0.66 +0.3 1,049,051 + trmB LU632_RS05425 0.78 +0.3 1,049,051 + trmB LU632_RS05425 0.78 -0.0 1,049,051 + trmB LU632_RS05425 0.78 +0.7 1,049,052 - trmB LU632_RS05425 0.78 +0.2 1,049,052 - trmB LU632_RS05425 0.78 -0.8 1,049,052 - trmB LU632_RS05425 0.78 -0.8 1,049,052 - trmB LU632_RS05425 0.78 +0.6 1,049,052 - trmB LU632_RS05425 0.78 +0.1 1,049,073 - trmB LU632_RS05425 0.81 +0.3 1,049,109 + trmB LU632_RS05425 0.86 -0.3 1,049,109 + trmB LU632_RS05425 0.86 +0.1 1,049,110 - trmB LU632_RS05425 0.86 +0.3 1,049,110 - trmB LU632_RS05425 0.86 +0.7 1,049,110 - trmB LU632_RS05425 0.86 -0.5 1,049,110 - trmB LU632_RS05425 0.86 -0.3 1,049,113 + trmB LU632_RS05425 0.86 -0.8
Or see this region's nucleotide sequence