Experiment: CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05040 and LU632_RS05045 overlap by 4 nucleotides LU632_RS05045 and LU632_RS05050 are separated by 127 nucleotides LU632_RS05050 and LU632_RS05055 are separated by 304 nucleotides LU632_RS05055 and LU632_RS05060 overlap by 4 nucleotides
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660
_RS05045
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
LU632_RS05055: LU632_RS05055 - TIGR03757 family integrating conjugative element protein, at 985,890 to 986,291
_RS05055
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
Position (kb) 981
982
983
984
985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 980.792 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 981.051 kb on + strand at 981.051 kb on + strand at 981.052 kb on - strand at 981.052 kb on - strand at 981.053 kb on + strand at 981.054 kb on - strand at 981.054 kb on - strand at 981.080 kb on + strand at 981.081 kb on - strand at 981.118 kb on - strand at 981.183 kb on + strand at 981.183 kb on + strand at 981.184 kb on - strand at 981.184 kb on - strand at 981.189 kb on - strand at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.526 kb on - strand, within LU632_RS05045 at 981.574 kb on + strand, within LU632_RS05045 at 981.575 kb on - strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.595 kb on - strand, within LU632_RS05045 at 981.649 kb on - strand at 981.649 kb on - strand at 981.649 kb on - strand at 981.650 kb on + strand at 981.650 kb on + strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.659 kb on - strand at 981.796 kb on - strand at 981.807 kb on + strand at 981.807 kb on + strand at 981.808 kb on - strand at 981.968 kb on - strand at 982.003 kb on + strand at 982.318 kb on + strand, within LU632_RS05050 at 983.099 kb on - strand, within LU632_RS05050 at 983.184 kb on + strand, within LU632_RS05050 at 983.378 kb on + strand, within LU632_RS05050 at 983.639 kb on + strand, within LU632_RS05050 at 983.734 kb on + strand, within LU632_RS05050 at 983.878 kb on - strand, within LU632_RS05050 at 983.983 kb on - strand, within LU632_RS05050 at 984.127 kb on - strand, within LU632_RS05050 at 984.127 kb on - strand, within LU632_RS05050 at 984.341 kb on + strand, within LU632_RS05050 at 984.344 kb on - strand, within LU632_RS05050 at 984.920 kb on - strand, within LU632_RS05050 at 985.046 kb on - strand, within LU632_RS05050 at 985.055 kb on - strand, within LU632_RS05050 at 985.174 kb on + strand, within LU632_RS05050 at 985.291 kb on - strand at 985.504 kb on + strand at 985.546 kb on - strand at 985.546 kb on - strand at 985.574 kb on + strand at 985.575 kb on - strand at 985.684 kb on + strand at 985.705 kb on + strand at 985.705 kb on + strand at 985.706 kb on - strand at 985.707 kb on + strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.729 kb on - strand at 985.740 kb on + strand at 985.741 kb on - strand at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.957 kb on + strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.958 kb on - strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.959 kb on + strand, within LU632_RS05055 at 985.960 kb on - strand, within LU632_RS05055 at 985.962 kb on - strand, within LU632_RS05055 at 986.161 kb on + strand, within LU632_RS05055 at 986.229 kb on + strand, within LU632_RS05055 at 986.230 kb on - strand, within LU632_RS05055 at 986.431 kb on + strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.432 kb on - strand, within LU632_RS05060 at 986.502 kb on + strand, within LU632_RS05060 at 986.519 kb on - strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060 at 986.543 kb on + strand, within LU632_RS05060
Per-strain Table
Position Strand Gene LocusTag Fraction CucXylem remove 980,792 + LU632_RS05040 0.83 +0.5 980,823 + LU632_RS05040 0.84 -0.1 980,823 + LU632_RS05040 0.84 +1.0 980,824 - LU632_RS05040 0.84 +1.2 980,824 - LU632_RS05040 0.84 +0.9 980,824 - LU632_RS05040 0.84 -0.8 980,825 + LU632_RS05040 0.84 -0.4 980,825 + LU632_RS05040 0.84 -0.6 981,051 + -0.2 981,051 + +1.3 981,052 - -1.2 981,052 - +0.7 981,053 + -0.1 981,054 - -1.2 981,054 - +0.5 981,080 + +0.3 981,081 - -0.4 981,118 - +0.4 981,183 + -0.0 981,183 + -0.3 981,184 - -0.2 981,184 - -1.0 981,189 - +1.1 981,525 + LU632_RS05045 0.64 -0.0 981,525 + LU632_RS05045 0.64 -0.0 981,525 + LU632_RS05045 0.64 -0.2 981,526 - LU632_RS05045 0.65 -0.3 981,574 + LU632_RS05045 0.77 -0.2 981,575 - LU632_RS05045 0.78 -0.0 981,592 + LU632_RS05045 0.82 -0.9 981,592 + LU632_RS05045 0.82 -0.4 981,592 + LU632_RS05045 0.82 -0.1 981,593 - LU632_RS05045 0.82 -0.2 981,593 - LU632_RS05045 0.82 -1.7 981,593 - LU632_RS05045 0.82 +0.0 981,594 + LU632_RS05045 0.83 -0.9 981,594 + LU632_RS05045 0.83 +0.5 981,595 - LU632_RS05045 0.83 -1.2 981,649 - +0.2 981,649 - +0.4 981,649 - -0.4 981,650 + +1.1 981,650 + -0.7 981,651 - +0.2 981,651 - -0.5 981,651 - +0.5 981,659 - +0.4 981,796 - +0.3 981,807 + +1.5 981,807 + -0.4 981,808 - -1.2 981,968 - -0.2 982,003 + +0.2 982,318 + LU632_RS05050 0.14 -0.1 983,099 - LU632_RS05050 0.35 +0.4 983,184 + LU632_RS05050 0.37 +0.2 983,378 + LU632_RS05050 0.42 +0.2 983,639 + LU632_RS05050 0.49 +0.3 983,734 + LU632_RS05050 0.51 -0.4 983,878 - LU632_RS05050 0.55 -0.2 983,983 - LU632_RS05050 0.58 +0.6 984,127 - LU632_RS05050 0.62 -1.2 984,127 - LU632_RS05050 0.62 +0.8 984,341 + LU632_RS05050 0.67 +0.0 984,344 - LU632_RS05050 0.67 -0.3 984,920 - LU632_RS05050 0.82 -0.4 985,046 - LU632_RS05050 0.86 -0.5 985,055 - LU632_RS05050 0.86 -1.0 985,174 + LU632_RS05050 0.89 +0.8 985,291 - +0.1 985,504 + -0.8 985,546 - +0.1 985,546 - -0.7 985,574 + -2.1 985,575 - +0.5 985,684 + -0.3 985,705 + +0.1 985,705 + +0.4 985,706 - +0.8 985,707 + +0.1 985,729 - +0.2 985,729 - +0.8 985,729 - +0.5 985,740 + +0.4 985,741 - -0.6 985,957 + LU632_RS05055 0.17 -0.3 985,957 + LU632_RS05055 0.17 +0.3 985,957 + LU632_RS05055 0.17 -0.2 985,957 + LU632_RS05055 0.17 +2.3 985,958 - LU632_RS05055 0.17 -0.6 985,958 - LU632_RS05055 0.17 -0.7 985,959 + LU632_RS05055 0.17 +0.0 985,959 + LU632_RS05055 0.17 +0.1 985,959 + LU632_RS05055 0.17 +0.2 985,960 - LU632_RS05055 0.17 -0.3 985,962 - LU632_RS05055 0.18 -0.4 986,161 + LU632_RS05055 0.67 -0.6 986,229 + LU632_RS05055 0.84 +1.1 986,230 - LU632_RS05055 0.85 +0.2 986,431 + LU632_RS05060 0.14 -0.4 986,432 - LU632_RS05060 0.14 +0.5 986,432 - LU632_RS05060 0.14 -0.2 986,502 + LU632_RS05060 0.20 -0.2 986,519 - LU632_RS05060 0.22 -1.0 986,543 + LU632_RS05060 0.24 -0.3 986,543 + LU632_RS05060 0.24 -0.2
Or see this region's nucleotide sequence