Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05035

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS05030 and LU632_RS05035 are separated by 509 nucleotidesLU632_RS05035 and LU632_RS05040 overlap by 1 nucleotides LU632_RS05030: LU632_RS05030 - TIGR03752 family integrating conjugative element protein, at 977,024 to 977,569 _RS05030 LU632_RS05035: LU632_RS05035 - TIGR03751 family conjugal transfer lipoprotein, at 978,079 to 978,417 _RS05035 LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281 _RS05040 Position (kb) 978 979Strain fitness (log2 ratio) -2 -1 0 1 2at 977.189 kb on - strand, within LU632_RS05030at 977.223 kb on - strand, within LU632_RS05030at 977.223 kb on - strand, within LU632_RS05030at 977.288 kb on + strand, within LU632_RS05030at 977.288 kb on + strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.289 kb on - strand, within LU632_RS05030at 977.302 kb on + strand, within LU632_RS05030at 977.302 kb on + strand, within LU632_RS05030at 977.303 kb on - strand, within LU632_RS05030at 977.303 kb on - strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.435 kb on + strand, within LU632_RS05030at 977.436 kb on - strand, within LU632_RS05030at 977.440 kb on - strand, within LU632_RS05030at 977.440 kb on - strand, within LU632_RS05030at 977.463 kb on + strand, within LU632_RS05030at 977.463 kb on + strand, within LU632_RS05030at 977.464 kb on - strand, within LU632_RS05030at 977.464 kb on - strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.467 kb on + strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.468 kb on - strand, within LU632_RS05030at 977.500 kb on + strand, within LU632_RS05030at 977.767 kb on + strandat 977.799 kb on + strandat 977.885 kb on - strandat 977.885 kb on - strandat 977.910 kb on + strandat 977.910 kb on + strandat 977.911 kb on - strandat 978.030 kb on + strandat 978.047 kb on + strandat 978.048 kb on - strandat 978.099 kb on + strandat 978.100 kb on - strandat 978.213 kb on + strand, within LU632_RS05035at 978.301 kb on + strand, within LU632_RS05035at 978.301 kb on + strand, within LU632_RS05035at 978.302 kb on - strand, within LU632_RS05035at 978.357 kb on - strand, within LU632_RS05035at 978.357 kb on - strand, within LU632_RS05035at 978.357 kb on - strand, within LU632_RS05035at 978.357 kb on - strand, within LU632_RS05035at 978.368 kb on - strand, within LU632_RS05035at 978.383 kb on - strand, within LU632_RS05035at 978.383 kb on - strand, within LU632_RS05035at 978.565 kb on - strandat 978.591 kb on + strandat 978.648 kb on - strandat 978.826 kb on - strand, within LU632_RS05040at 978.839 kb on - strand, within LU632_RS05040at 978.878 kb on + strand, within LU632_RS05040at 978.879 kb on - strand, within LU632_RS05040at 979.005 kb on - strand, within LU632_RS05040at 979.088 kb on - strand, within LU632_RS05040at 979.119 kb on - strand, within LU632_RS05040at 979.203 kb on + strand, within LU632_RS05040at 979.203 kb on + strand, within LU632_RS05040at 979.203 kb on + strand, within LU632_RS05040at 979.204 kb on - strand, within LU632_RS05040at 979.204 kb on - strand, within LU632_RS05040at 979.204 kb on - strand, within LU632_RS05040at 979.321 kb on + strand, within LU632_RS05040at 979.321 kb on + strand, within LU632_RS05040at 979.331 kb on - strand, within LU632_RS05040at 979.334 kb on + strand, within LU632_RS05040at 979.335 kb on - strand, within LU632_RS05040at 979.335 kb on - strand, within LU632_RS05040at 979.335 kb on - strand, within LU632_RS05040at 979.335 kb on - strand, within LU632_RS05040at 979.338 kb on - strand, within LU632_RS05040at 979.338 kb on - strand, within LU632_RS05040

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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977,189 - LU632_RS05030 0.30 -0.6
977,223 - LU632_RS05030 0.36 -0.1
977,223 - LU632_RS05030 0.36 +0.6
977,288 + LU632_RS05030 0.48 +1.0
977,288 + LU632_RS05030 0.48 +1.0
977,289 - LU632_RS05030 0.49 -0.1
977,289 - LU632_RS05030 0.49 +0.0
977,289 - LU632_RS05030 0.49 +0.3
977,302 + LU632_RS05030 0.51 -0.3
977,302 + LU632_RS05030 0.51 -1.2
977,303 - LU632_RS05030 0.51 -0.2
977,303 - LU632_RS05030 0.51 -0.4
977,435 + LU632_RS05030 0.75 +0.1
977,435 + LU632_RS05030 0.75 -0.1
977,435 + LU632_RS05030 0.75 -0.3
977,435 + LU632_RS05030 0.75 -0.7
977,436 - LU632_RS05030 0.75 +0.5
977,440 - LU632_RS05030 0.76 +0.4
977,440 - LU632_RS05030 0.76 +0.5
977,463 + LU632_RS05030 0.80 -0.2
977,463 + LU632_RS05030 0.80 -0.3
977,464 - LU632_RS05030 0.81 +0.8
977,464 - LU632_RS05030 0.81 -0.8
977,467 + LU632_RS05030 0.81 +0.4
977,467 + LU632_RS05030 0.81 +0.2
977,467 + LU632_RS05030 0.81 +0.8
977,467 + LU632_RS05030 0.81 +2.1
977,468 - LU632_RS05030 0.81 -0.5
977,468 - LU632_RS05030 0.81 -0.2
977,468 - LU632_RS05030 0.81 +0.6
977,500 + LU632_RS05030 0.87 +1.1
977,767 + +0.2
977,799 + -2.0
977,885 - +0.3
977,885 - -1.2
977,910 + -0.0
977,910 + -0.0
977,911 - -0.7
978,030 + -1.1
978,047 + -1.6
978,048 - +0.4
978,099 + -1.2
978,100 - -2.0
978,213 + LU632_RS05035 0.40 -0.0
978,301 + LU632_RS05035 0.65 +0.5
978,301 + LU632_RS05035 0.65 -0.1
978,302 - LU632_RS05035 0.66 -0.5
978,357 - LU632_RS05035 0.82 -0.2
978,357 - LU632_RS05035 0.82 +0.1
978,357 - LU632_RS05035 0.82 +0.2
978,357 - LU632_RS05035 0.82 -0.1
978,368 - LU632_RS05035 0.85 -0.5
978,383 - LU632_RS05035 0.90 +0.5
978,383 - LU632_RS05035 0.90 -0.4
978,565 - +0.2
978,591 + -0.3
978,648 - -0.5
978,826 - LU632_RS05040 0.14 +0.0
978,839 - LU632_RS05040 0.15 +0.1
978,878 + LU632_RS05040 0.16 -0.6
978,879 - LU632_RS05040 0.16 +0.5
979,005 - LU632_RS05040 0.21 -0.3
979,088 - LU632_RS05040 0.23 +0.1
979,119 - LU632_RS05040 0.25 -1.0
979,203 + LU632_RS05040 0.27 +0.4
979,203 + LU632_RS05040 0.27 -0.6
979,203 + LU632_RS05040 0.27 +0.8
979,204 - LU632_RS05040 0.27 -0.2
979,204 - LU632_RS05040 0.27 -0.2
979,204 - LU632_RS05040 0.27 -0.4
979,321 + LU632_RS05040 0.32 +2.3
979,321 + LU632_RS05040 0.32 +0.1
979,331 - LU632_RS05040 0.32 -0.4
979,334 + LU632_RS05040 0.32 +0.2
979,335 - LU632_RS05040 0.32 +1.6
979,335 - LU632_RS05040 0.32 -0.3
979,335 - LU632_RS05040 0.32 -1.5
979,335 - LU632_RS05040 0.32 -0.1
979,338 - LU632_RS05040 0.32 -0.7
979,338 - LU632_RS05040 0.32 -0.4

Or see this region's nucleotide sequence