Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04915

Experiment: CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04900 and LU632_RS04905 are separated by 13 nucleotidesLU632_RS04905 and LU632_RS04910 overlap by 20 nucleotidesLU632_RS04910 and LU632_RS04915 are separated by 47 nucleotidesLU632_RS04915 and LU632_RS04920 are separated by 194 nucleotidesLU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04900: LU632_RS04900 - single-stranded DNA-binding protein, at 957,168 to 957,757 _RS04900 LU632_RS04905: LU632_RS04905 - DUF4160 domain-containing protein, at 957,771 to 958,007 _RS04905 LU632_RS04910: LU632_RS04910 - DUF2442 domain-containing protein, at 957,988 to 958,251 _RS04910 LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621 _RS04915 LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412 _RS04920 LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131 _RS04925 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.402 kb on + strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.403 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.419 kb on - strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.428 kb on + strand, within LU632_RS04900at 957.460 kb on - strand, within LU632_RS04900at 957.465 kb on - strand, within LU632_RS04900at 957.744 kb on + strandat 957.767 kb on + strandat 957.768 kb on - strandat 957.768 kb on - strandat 957.777 kb on - strandat 957.781 kb on + strandat 957.782 kb on - strandat 957.782 kb on - strandat 957.808 kb on - strand, within LU632_RS04905at 957.848 kb on + strand, within LU632_RS04905at 957.905 kb on + strand, within LU632_RS04905at 958.258 kb on + strandat 958.305 kb on - strandat 958.305 kb on - strandat 959.793 kb on - strandat 959.793 kb on - strandat 959.836 kb on + strandat 959.837 kb on - strandat 959.979 kb on - strand, within LU632_RS04920at 960.005 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.070 kb on + strand, within LU632_RS04920at 960.076 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.078 kb on + strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.079 kb on - strand, within LU632_RS04920at 960.083 kb on - strand, within LU632_RS04920at 960.128 kb on - strand, within LU632_RS04920at 960.492 kb on + strand, within LU632_RS04925at 960.492 kb on + strand, within LU632_RS04925at 960.492 kb on + strand, within LU632_RS04925at 960.524 kb on + strand, within LU632_RS04925at 960.525 kb on - strand, within LU632_RS04925at 960.525 kb on - strand, within LU632_RS04925at 960.529 kb on + strand, within LU632_RS04925at 960.529 kb on + strand, within LU632_RS04925at 960.530 kb on - strand, within LU632_RS04925at 960.530 kb on - strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.591 kb on + strand, within LU632_RS04925at 960.594 kb on + strand, within LU632_RS04925

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Per-strain Table

Position Strand Gene LocusTag Fraction CucXylem
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957,402 + LU632_RS04900 0.40 -0.2
957,402 + LU632_RS04900 0.40 +0.1
957,402 + LU632_RS04900 0.40 -0.2
957,402 + LU632_RS04900 0.40 +0.6
957,403 - LU632_RS04900 0.40 +0.0
957,403 - LU632_RS04900 0.40 -0.2
957,403 - LU632_RS04900 0.40 -2.1
957,403 - LU632_RS04900 0.40 +0.9
957,419 - LU632_RS04900 0.43 -0.2
957,419 - LU632_RS04900 0.43 -0.7
957,419 - LU632_RS04900 0.43 +0.2
957,419 - LU632_RS04900 0.43 -0.2
957,419 - LU632_RS04900 0.43 +0.1
957,428 + LU632_RS04900 0.44 -0.6
957,428 + LU632_RS04900 0.44 -0.5
957,428 + LU632_RS04900 0.44 -0.1
957,460 - LU632_RS04900 0.49 +0.6
957,465 - LU632_RS04900 0.50 +0.0
957,744 + -0.6
957,767 + +0.2
957,768 - +0.2
957,768 - +0.3
957,777 - +0.2
957,781 + -0.4
957,782 - -0.6
957,782 - -0.2
957,808 - LU632_RS04905 0.16 +0.9
957,848 + LU632_RS04905 0.32 +0.5
957,905 + LU632_RS04905 0.57 -0.1
958,258 + -0.8
958,305 - -1.0
958,305 - -0.2
959,793 - -0.7
959,793 - -1.0
959,836 + +0.2
959,837 - -0.4
959,979 - LU632_RS04920 0.27 +0.1
960,005 + LU632_RS04920 0.32 -0.8
960,070 + LU632_RS04920 0.43 -1.4
960,070 + LU632_RS04920 0.43 -1.2
960,070 + LU632_RS04920 0.43 -0.3
960,076 + LU632_RS04920 0.44 -0.1
960,078 + LU632_RS04920 0.44 +0.3
960,078 + LU632_RS04920 0.44 +0.1
960,078 + LU632_RS04920 0.44 -0.0
960,078 + LU632_RS04920 0.44 +2.3
960,078 + LU632_RS04920 0.44 -0.2
960,078 + LU632_RS04920 0.44 +0.8
960,078 + LU632_RS04920 0.44 -0.4
960,078 + LU632_RS04920 0.44 +0.3
960,078 + LU632_RS04920 0.44 -1.7
960,078 + LU632_RS04920 0.44 +0.4
960,078 + LU632_RS04920 0.44 +0.3
960,078 + LU632_RS04920 0.44 -0.3
960,079 - LU632_RS04920 0.44 -2.0
960,079 - LU632_RS04920 0.44 -0.0
960,079 - LU632_RS04920 0.44 -1.6
960,079 - LU632_RS04920 0.44 -0.1
960,079 - LU632_RS04920 0.44 +0.1
960,079 - LU632_RS04920 0.44 -0.7
960,079 - LU632_RS04920 0.44 -0.1
960,079 - LU632_RS04920 0.44 +0.2
960,083 - LU632_RS04920 0.45 -0.2
960,128 - LU632_RS04920 0.52 -0.3
960,492 + LU632_RS04925 0.11 -0.0
960,492 + LU632_RS04925 0.11 +0.2
960,492 + LU632_RS04925 0.11 +0.3
960,524 + LU632_RS04925 0.16 +0.8
960,525 - LU632_RS04925 0.16 -0.0
960,525 - LU632_RS04925 0.16 -0.1
960,529 + LU632_RS04925 0.17 -0.7
960,529 + LU632_RS04925 0.17 +0.8
960,530 - LU632_RS04925 0.17 +0.2
960,530 - LU632_RS04925 0.17 +0.4
960,591 + LU632_RS04925 0.25 -0.3
960,591 + LU632_RS04925 0.25 +0.7
960,591 + LU632_RS04925 0.25 +0.8
960,594 + LU632_RS04925 0.26 +0.3

Or see this region's nucleotide sequence